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root/owl/trunk/src/owl/core/runners
r1230
File Last Change
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blast/ 1106 (11 years ago) by jmduarteg: Implemented caching of blast in UniprotHomologList
gromacs/ 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
tinker/ 1127 (11 years ago) by matt4077: New Residuescoringfunctionimplementation
CalcSurfVolRunner.java 1032 (11 years ago) by jmduarteg: Extracted the calc-vol and calc-surf runner code to its own Runner class.
DaliRunner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
DsspRunner.java 1046 (11 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
MaxClusterRunner.java 1199 (10 years ago) by hstehr: added some debug output (commented out)
NaccessRunner.java 1230 (10 years ago) by jmduarteg: Fixed bug: bsa values were wrongly calculated. Now sort of interfaces is always descending. Some more testing for individual residues asa and bsa values. Still an issue: individual bsas are not matching pisa's even though total interface areas are fine.
PolyposeRunner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PsipredError.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PsipredRunner.java 1046 (11 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
SelectonRunner.java 1132 (10 years ago) by jmduarteg: New SelectonRunner class. More taxonomy information retrieved from uniprot.
TcoffeeError.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
TcoffeeRunner.java 1097 (11 years ago) by jmduarteg: Now explicitely specifying output dnd file in tcoffee so it can be removed by the calling program.
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