ViewVC Help
View Directory | Revision Log | Download Tarball | View Changeset | Root Listing
root/owl/trunk/src/owl/core/runners
r1327
File Last Change
 ../
blast/ 1326 (10 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
gromacs/ 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
tinker/ 1326 (10 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
CalcSurfVolRunner.java 1032 (11 years ago) by jmduarteg: Extracted the calc-vol and calc-surf runner code to its own Runner class.
DaliRunner.java 1326 (10 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
DsspRunner.java 1046 (11 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
MaxClusterRunner.java 1199 (10 years ago) by hstehr: added some debug output (commented out)
NaccessRunner.java 1242 (10 years ago) by jmduarteg: Fixed bug: NACCESS (weirdly) calculates slightly different ASA values for same molecule in different orientation (i.e. it depends on the choice of axes)!! That produces then some strange BSA values (including some negative) and slight discrepancies. Thus now we run NACCESS always for each of the 2 isolated molecules of the interface and then the complex (and so losing efficiency).
PolyposeRunner.java 1326 (10 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
PsipredError.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PsipredRunner.java 1046 (11 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
SelectonRunner.java 1326 (10 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
TcoffeeError.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
TcoffeeRunner.java 1326 (10 years ago) by jmduarteg: Renamed xxxxError classes to xxxxException as they should be.
         11 files shown