 ../
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blast/
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1106
(12 years ago)
by jmduarteg:
Implemented caching of blast in UniprotHomologList
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gromacs/
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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tinker/
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1057
(12 years ago)
by matt4077:
add psi/phi constraints from secondary structure to tinker reconstructions
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CalcSurfVolRunner.java
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1032
(12 years ago)
by jmduarteg:
Extracted the calc-vol and calc-surf runner code to its own Runner class.
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DaliRunner.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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DsspRunner.java
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1046
(12 years ago)
by hstehr:
JPredConnection now returns a SecondaryStructure object; some updated javadocs
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MaxClusterRunner.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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NaccessRunner.java
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1005
(12 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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PolyposeRunner.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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PsipredError.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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PsipredRunner.java
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1046
(12 years ago)
by hstehr:
JPredConnection now returns a SecondaryStructure object; some updated javadocs
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TcoffeeError.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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TcoffeeRunner.java
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1097
(12 years ago)
by jmduarteg:
Now explicitely specifying output dnd file in tcoffee so it can be removed by the calling program.
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