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r1066
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gromacs/ 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
blast/ 1045 (11 years ago) by jmduarteg: Uniprot and embl ws dbfetch connections can now do multiple entries per request. Update to parse also the hit_def tag in blast parser.
tinker/ 1057 (11 years ago) by matt4077: add psi/phi constraints from secondary structure to tinker reconstructions
NaccessRunner.java 1005 (11 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
PsipredError.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
TcoffeeError.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
DaliRunner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
TcoffeeRunner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
MaxClusterRunner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PolyposeRunner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
CalcSurfVolRunner.java 1032 (11 years ago) by jmduarteg: Extracted the calc-vol and calc-surf runner code to its own Runner class.
DsspRunner.java 1046 (11 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
PsipredRunner.java 1046 (11 years ago) by hstehr: JPredConnection now returns a SecondaryStructure object; some updated javadocs
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