 ../
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BlastHitList.java
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1106
(12 years ago)
by jmduarteg:
Implemented caching of blast in UniprotHomologList
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BlastXMLParser.java
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1106
(12 years ago)
by jmduarteg:
Implemented caching of blast in UniprotHomologList
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BlastHit.java
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1045
(12 years ago)
by jmduarteg:
Uniprot and embl ws dbfetch connections can now do multiple entries per request. Update to parse also the hit_def tag in blast parser.
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BlastRunner.java
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1043
(12 years ago)
by jmduarteg:
Fixed blast parsing bug: was parsing the Hit_def tag instead of the Hit_id tag for the subject id. When formatdb is run with option "-o T" then indices are properly generated and Hit_id contains the correct tag.
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BlastError.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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BlastUtils.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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BlastTabularParser.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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