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Revision 1304 - Directory Listing
Modified Sun Jan 16 16:06:09 2011 UTC (10 years, 9 months ago) by jmduarteg
Fixed important bug: we didn't model the blast data properly. A hit is composed of several hsps. Now our classes following that data model properly (before we treated a hit as an hsp).
Revision 1106 - Directory Listing
Modified Thu Jun 10 09:24:30 2010 UTC (11 years, 4 months ago) by jmduarteg
Implemented caching of blast in UniprotHomologList
Revision 1045 - Directory Listing
Modified Mon Apr 26 12:55:28 2010 UTC (11 years, 6 months ago) by jmduarteg
Uniprot and embl ws dbfetch connections can now do multiple entries per request. Update to parse also the hit_def tag in blast parser.
Revision 1043 - Directory Listing
Modified Thu Apr 22 12:21:37 2010 UTC (11 years, 6 months ago) by jmduarteg
Fixed blast parsing bug: was parsing the Hit_def tag instead of the Hit_id tag for the subject id. When formatdb is run with option "-o T" then indices are properly generated and Hit_id contains the correct tag.
Revision 1009 - Directory Listing
Modified Wed Mar 31 15:50:04 2010 UTC (11 years, 7 months ago) by hstehr
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
Revision 1006 - Directory Listing
Added Wed Mar 31 13:00:35 2010 UTC (11 years, 7 months ago) by hstehr
refactoring: created packages runners.blast, runners.gromacs, structure.graphs, moved actionTools to util, structure.decoyScoring to owl.decoyScoring, tinker to runners.tinker