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root/owl/trunk/src/owl/core/sequence
r1163
File Last Change (rev)
 ../
alignment/ 1147 (12 years ago) by jmduarteg: Implemented logging with log4j library
UniprotEntry.java 1162 (12 years ago) by jmduarteg: Allowing plasmids as gene encoding organelles without having to treat them especially as they don't have a different genetic code.
UniprotHomologList.java 1159 (12 years ago) by jmduarteg: Reverting change made in last revision. It intended to fix a bug for a particular test case (don't know anymore which one!) but it actually broke most other cases.
Codon.java 1154 (12 years ago) by jmduarteg: And all other amiguous codons
UniprotHomolog.java 1143 (12 years ago) by jmduarteg: New methods to check for reliability of positions with respect of the CDS matching
TranslatedFrame.java 1143 (12 years ago) by jmduarteg: New methods to check for reliability of positions with respect of the CDS matching
GeneticCodeType.java 1132 (12 years ago) by jmduarteg: New SelectonRunner class. More taxonomy information retrieved from uniprot.
ProteinToCDSMatch.java 1126 (12 years ago) by jmduarteg: New code to obtain the nucleotide alignment by mapping the aminoacid alignment to the nucleotide sequences.
Sequence.java 1119 (12 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
TranslationException.java 1119 (12 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
Translator.java 1119 (12 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
geneticCode.dat 1114 (12 years ago) by jmduarteg: New feature: code for dna to protein translation
ReadingFrame.java 1114 (12 years ago) by jmduarteg: New feature: code for dna to protein translation
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