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root/owl/trunk/src/owl/core/sequence
r1130
File (rev) Last Change
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alignment/ 1116 (12 years ago) by jmduarteg: Now properly translating all frames and finding the best translation match in checkEmblCDSMatching. New class doing all the matching of protein to CDS.
geneticCode.dat 1114 (12 years ago) by jmduarteg: New feature: code for dna to protein translation
UniprotHomologList.java 1126 (12 years ago) by jmduarteg: New code to obtain the nucleotide alignment by mapping the aminoacid alignment to the nucleotide sequences.
UniprotHomolog.java 1120 (12 years ago) by jmduarteg: New class UniprotEntry. Things make a lot more sense now...
UniprotEntry.java 1123 (12 years ago) by jmduarteg: Improved the selection of representative CDS
Translator.java 1119 (12 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
TranslationException.java 1119 (12 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
TranslatedFrame.java 1122 (12 years ago) by jmduarteg: Some refactoring
Sequence.java 1119 (12 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
ReadingFrame.java 1114 (12 years ago) by jmduarteg: New feature: code for dna to protein translation
ProteinToCDSMatch.java 1126 (12 years ago) by jmduarteg: New code to obtain the nucleotide alignment by mapping the aminoacid alignment to the nucleotide sequences.
GeneticCodeType.java 1126 (12 years ago) by jmduarteg: New code to obtain the nucleotide alignment by mapping the aminoacid alignment to the nucleotide sequences.
Codon.java 1119 (12 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
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