Revision 1306 - Directory Listing
Modified Tue Jan 25 14:15:20 2011 UTC (11 years, 3 months ago) by jmduarteg

Added Serializable interface to many classes. To be able to serialize classes containing objects of these types.

Revision 1226 - Directory Listing
Modified Mon Sep 6 10:15:25 2010 UTC (11 years, 8 months ago) by hstehr

Refactoring of SiftsConnection and SiftsFeature, now implementing Uniprot2Pdb

Revision 1170 - Directory Listing
Modified Wed Aug 4 10:43:52 2010 UTC (11 years, 9 months ago) by hstehr

adding secondary structure functions to RIGEnsemble and GraphAverager: GraphAverager can now use DSSP to get consensus secondary structure from underlying structures.

Revision 1067 - Directory Listing
Modified Wed May 12 16:36:24 2010 UTC (12 years ago) by hstehr

fixed a bug in SecondaryStructure.print(); added SecStrucElement.toString()

Revision 1066 - Directory Listing
Modified Wed May 12 12:00:11 2010 UTC (12 years ago) by hstehr

new methods needed for CCCP: RIGraph.addEdgeIJ(i,j,weight), RIGEnsembl.loadFromDirectory(), GraphAverager.addZeroEdges(), SecondaryStructure.print()

Revision 1062 - Directory Listing
Modified Sun May 9 21:54:40 2010 UTC (12 years ago) by stehr

fixed a minor bug in JPredConnection; new method SecondaryStructure.getConsensusSecondaryStructure(); changed visibility of RIGEnsemble.addFile() to public

Revision 1057 - Directory Listing
Modified Mon May 3 15:51:54 2010 UTC (12 years ago) by matt4077

add psi/phi constraints from secondary structure to tinker reconstructions

Revision 1047 - Directory Listing
Modified Mon Apr 26 16:13:36 2010 UTC (12 years ago) by jmduarteg

SecondaryStructure now implements Iterable after refactoring of getIterator

Revision 1046 - Directory Listing
Modified Mon Apr 26 15:26:59 2010 UTC (12 years ago) by hstehr

JPredConnection now returns a SecondaryStructure object; some updated javadocs

Revision 1009 - Directory Listing
Added Wed Mar 31 15:50:04 2010 UTC (12 years, 1 month ago) by hstehr

refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features