 ../
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contactmaps/
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1314
(11 years ago)
by jmduarteg:
Finally got rid of all duplicated amino acid methods in AAinfo. Now everything unified in AminoAcid enum.
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SparseMatrixException.java
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1239
(11 years ago)
by gmueller:
sparse matrix exception
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SparseMatrix.java
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1243
(11 years ago)
by gmueller:
some methods removed and added to a new class, other simplified
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SetScore.java
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1305
(11 years ago)
by jmduarteg:
Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
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Scorer.java
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1305
(11 years ago)
by jmduarteg:
Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
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Reconstructer.java
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1316
(11 years ago)
by jmduarteg:
Got rid (finally!) of AAinfo. Its functionality is now in ContactType and AminoAcid.
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Embedder.java
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1007
(12 years ago)
by hstehr:
refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
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Distiller.java
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1305
(11 years ago)
by jmduarteg:
Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
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ConePeeler.java
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1316
(11 years ago)
by jmduarteg:
Got rid (finally!) of AAinfo. Its functionality is now in ContactType and AminoAcid.
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BoundsSmoother.java
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1316
(11 years ago)
by jmduarteg:
Got rid (finally!) of AAinfo. Its functionality is now in ContactType and AminoAcid.
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Bound.java
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1007
(12 years ago)
by hstehr:
refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
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AdjacencyMatrix.java
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1245
(11 years ago)
by gmueller:
does most of the job SparseMatrix did before
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