 ../
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connections/
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1372
(11 years ago)
by jmduarteg:
MAJOR INTERFACE CHANGE: the main PDB data loading interface has changed. Now all loading of data occurs through PdbAsymUnit. Refactoring of some classes: Pdb is now PdbChain.
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runners/
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1597
(9 years ago)
by jmduarteg:
Several changes related to blast:
- now supporting blast+ blastp.
- blast xml parser can now ignore the DTD url, avoiding unnecessary network access if desired
- refactoring: legacy blast related stuff is now refactored to contain "legacy", runBlastp refers to blast+
Also updated uniprot jar.
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structure/
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1588
(9 years ago)
by jmduarteg:
New feature: now we can take cofactors into account for calculation of ASA in interfaces
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util/
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1597
(9 years ago)
by jmduarteg:
Several changes related to blast:
- now supporting blast+ blastp.
- blast xml parser can now ignore the DTD url, avoiding unnecessary network access if desired
- refactoring: legacy blast related stuff is now refactored to contain "legacy", runBlastp refers to blast+
Also updated uniprot jar.
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