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Revision 1392 - Directory Listing
Modified Thu May 19 14:27:50 2011 UTC (10 years, 6 months ago) by jmduarteg
MAJOR CHANGE: now able to read and treat properly HETATMS and nucleotides from PDB entries. All tests pass. Anyway surely there will be some bugs to iron out still.
Revision 1372 - Directory Listing
Modified Wed Mar 30 09:55:49 2011 UTC (10 years, 8 months ago) by jmduarteg
MAJOR INTERFACE CHANGE: the main PDB data loading interface has changed. Now all loading of data occurs through PdbAsymUnit. Refactoring of some classes: Pdb is now PdbChain.
Revision 1341 - Directory Listing
Modified Tue Mar 15 08:40:43 2011 UTC (10 years, 8 months ago) by jmduarteg
Now parsing pdb titles in PDB, CIF and pdbase. Tests pass.
Moved some constants from Pdb to PdbAsymUnit
Revision 1326 - Directory Listing
Modified Thu Mar 3 13:21:18 2011 UTC (10 years, 9 months ago) by jmduarteg
Renamed xxxxError classes to xxxxException as they should be.
Revision 1313 - Directory Listing
Modified Wed Feb 9 10:28:56 2011 UTC (10 years, 9 months ago) by jmduarteg
Now taking paths from owl_test_paths.dat file
Revision 1305 - Directory Listing
Modified Fri Jan 21 10:11:16 2011 UTC (10 years, 10 months ago) by jmduarteg
Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
Revision 1009 - Directory Listing
Modified Wed Mar 31 15:50:04 2010 UTC (11 years, 8 months ago) by hstehr
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
Revision 1008 - Directory Listing
Modified Wed Mar 31 14:03:27 2010 UTC (11 years, 8 months ago) by hstehr
Copied from: trunk/src/tests/tinker revision 1006
refactoring: adapting test packages to match new package structure
Revision 1006 - Directory Listing
Modified Wed Mar 31 13:00:35 2010 UTC (11 years, 8 months ago) by hstehr
Original Path: trunk/src/tests/tinker
refactoring: created packages runners.blast, runners.gromacs, structure.graphs, moved actionTools to util, structure.decoyScoring to owl.decoyScoring, tinker to runners.tinker
Revision 1005 - Directory Listing
Modified Wed Mar 31 12:29:26 2010 UTC (11 years, 8 months ago) by hstehr
Original Path: trunk/src/tests/tinker
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
Revision 958 - Directory Listing
Modified Fri Feb 12 15:22:36 2010 UTC (11 years, 9 months ago) by duarte
Original Path: trunk/src/tests/tinker
Moved Interval* and IntPair* classes to tools package
Revision 951 - Directory Listing
Modified Fri Jan 29 16:12:34 2010 UTC (11 years, 10 months ago) by duarte
Original Path: trunk/src/tests/tinker
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars. 
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
Revision 885 - Directory Listing
Added Fri Aug 14 10:37:31 2009 UTC (12 years, 3 months ago) by duarte
Original Path: trunk/tests/tinker
Major change: now hydrogens are read in Pdb and subclasses
New getChirality method in Residue.
Added some more unit tests.