Revision
1030 -
Directory Listing
Modified
Mon Apr 19 09:39:07 2010 UTC
(12 years, 1 month ago)
by
jmduarteg
Extracted constants to owl_test_paths.dat and added CASP7 fasta files to resources dir. Now BlastParsersTest should be able to run anywhere.
Revision
987 -
Directory Listing
Modified
Thu Mar 18 11:08:58 2010 UTC
(12 years, 2 months ago)
by
jmduarteg
Original Path:
trunk/src/tests/proteinstructure/data
New package runners for Runner classes. At the moment only contains the new class NaccessRunner (moved out of Pdb class)
Introduced a config file for tests so that one can set externally the executable paths and any other necessary data to run tests (at the moment only implemented in PdbTest.java). PdbTest now should run anywhere (if you have a local pdbase installation!)
Moved the consurf parser out of Pdb to its own class ConsurfConnection in the connection package.
Revision
951 -
Directory Listing
Modified
Fri Jan 29 16:12:34 2010 UTC
(12 years, 3 months ago)
by
duarte
Original Path:
trunk/src/tests/proteinstructure/data
Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars.
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
Revision
884 -
Directory Listing
Modified
Tue Aug 11 16:01:00 2009 UTC
(12 years, 9 months ago)
by
duarte
Original Path:
trunk/tests/proteinstructure/data
Major commit:
- change of the implementation of Pdb (interface remains backwards compatible). Now data stored in a proper object-oriented way. Pdb not abstract anymore, a protein model can be created by using one of the constructors
- added many tests and test files for Pdb (and merged some already existing tests from the default package)
- removed obsolete classes related to msd
- bug fix: PdbfilePdb now properly reads files with alt codes
- all tests passed
