Revision 1447 - (view) (annotate) - [select for diffs]
Modified Thu Aug 18 11:51:33 2011 UTC (10 years, 11 months ago) by jmduarteg
File length: 10156 byte(s)
Diff to previous 1446 , to selected 1444

Removing duplicate entry

Revision 1446 - (view) (annotate) - [select for diffs]
Modified Thu Aug 18 10:55:24 2011 UTC (10 years, 11 months ago) by jmduarteg
File length: 10163 byte(s)
Diff to previous 1445 , to selected 1444

Another removed entry, this time  a mismatch of titles PDB vs CIF

Revision 1445 - (view) (annotate) - [select for diffs]
Modified Thu Aug 18 10:29:42 2011 UTC (10 years, 11 months ago) by jmduarteg
File length: 10105 byte(s)
Diff to previous 1444

Removed another strange entry (after july 2011 remediation) from test list

Revision 1444 - (view) (annotate) - [selected]
Modified Thu Aug 18 09:56:40 2011 UTC (10 years, 11 months ago) by jmduarteg
File length: 9972 byte(s)
Diff to previous 1392

Removed a strange entry (after july 2011 remediation) from test list

Revision 1392 - (view) (annotate) - [select for diffs]
Modified Thu May 19 14:27:50 2011 UTC (11 years, 2 months ago) by jmduarteg
File length: 9839 byte(s)
Diff to previous 1293 , to selected 1444

MAJOR CHANGE: now able to read and treat properly HETATMS and nucleotides from PDB entries. All tests pass. Anyway surely there will be some bugs to iron out still.

Revision 1293 - (view) (annotate) - [select for diffs]
Modified Mon Dec 20 09:35:49 2010 UTC (11 years, 7 months ago) by jmduarteg
File length: 9596 byte(s)
Diff to previous 1218 , to selected 1444

Now parsing experimental method, resolution, R free and R sym.

Revision 1218 - (view) (annotate) - [select for diffs]
Modified Wed Sep 1 13:02:18 2010 UTC (11 years, 11 months ago) by jmduarteg
File length: 9051 byte(s)
Diff to previous 1008 , to selected 1444

Fixed bug: was null pointing in parsing NMR cif files because they don't have crystal parameter fields. Now skipping that properly. Added NMR test entry to test cases.

Revision 1008 - (view) (annotate) - [select for diffs]
Modified Wed Mar 31 14:03:27 2010 UTC (12 years, 4 months ago) by hstehr
File length: 8925 byte(s)
Diff to previous 951 , to selected 1444

refactoring: adapting test packages to match new package structure

Revision 951 - (view) (annotate) - [select for diffs]
Modified Fri Jan 29 16:12:34 2010 UTC (12 years, 6 months ago) by duarte
Original Path: trunk/src/tests/proteinstructure/data/cullpdb_20
File length: 8925 byte(s)
Diff to previous 884 , to selected 1444

Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars. 
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.

Revision 884 - (view) (annotate) - [select for diffs]
Added Tue Aug 11 16:01:00 2009 UTC (13 years ago) by duarte
Original Path: trunk/tests/proteinstructure/data/cullpdb_20
File length: 8925 byte(s)
Diff to selected 1444

Major commit: 
- change of the implementation of Pdb (interface remains backwards compatible). Now data stored in a proper object-oriented way. Pdb not abstract anymore, a protein model can be created by using one of the constructors
- added many tests and test files for Pdb (and merged some already existing tests from the default package)
- removed obsolete classes related to msd
- bug fix: PdbfilePdb now properly reads files with alt codes
- all tests passed