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# Line 184 | Line 184
184   emerge, the code that interfaces with the instrument software need not
185   change.
186   <P>
187 + <b>PyMsXML</b> is hosted at <a href="http://bioinformatics.org/project/?group_id=701">bioinformatics.org</a>.
188 + <P>
189   <quote>
190   <b>NOTE!</b>
191   <P>
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233   </code>
234   <P>
235   <li> Download and unpack the <b>PyMsXML</b> scripts and examples. <A
236 < href="http://www.umiacs.umd.edu/~nedwards/research/downloads/PyMsXML.zip">Download
236 > href="http://bioinformatics.org/project/filelist.php?group_id=701">Download
237   <b>PyMsXML</b></A>. After unzipping <b>PyMsXML</b>, edit the file pymsxml.cmd to
238   point to your Python installation (usually C:\Python24\python.exe)
239   and your <b>PyMsXML</b> installation.
# Line 269 | Line 271
271   <tt>ge</tt>, specifying =, &ne;, &lt;, &le;, &gt;, and &ge;
272   respectively.
273   <P>
274 + <dt>-V <i>version</i>, --version <i>version</i></dt><dd>
275 +                        XML version. mzXML only. Valid options
276 +                        <tt>2.1</tt>,<tt>2.2</tt>,<tt>3.0</tt>. Default: <tt>3.0</tt>.
277 + <P>
278 + <dt>-z, --compress_peaks</dt>
279 + <dd>Compress mzXML peak data using zlib. Default: No compression of peak data. Requires mzXML version 3.0.</dd>
280 + <P>
281   <dt>-Z <i>compress-format</i>, --compress <i>compress-format</i></dt>
282   <dd> Compress output file. Valid options: <tt>gz</tt>. Default: None, unless output file ends with <tt>.gz</tt>, then <tt>gz</tt>.
283   <P>

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