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December 15, 2009, at 04:03 PM
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Publications that result from use of this model should reference the following paper:
to:
Publications that result from the use of this model should reference the following paper:
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Publications that result from the use of ChemChains should reference the following paper:
T Helikar and JA Rogers. 2009. ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists. BMC Systems Biology. 6;3:58.
December 15, 2009, at 02:17 PM
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December 15, 2009, at 02:16 PM
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!!!V. 2.10
*Added a check for the existence of output nodes for the Patterns plugin
*Bug concerning the behavior of outputAll fixed.
*Errors from header files from g++4.3 fixed.
*Bug for vis mode under outputAll fixed.
*Revamped Plugins architecture. April 22, 2009, at 11:34 PM
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*the initial release of ChemChains
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*Initial release of ChemChains
April 22, 2009, at 11:33 PM
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!!!V. 1.10
*The release of GCC 4.3 broke ChemChains due to some headers that were not properly included. Fixed.
*Using the "-randInit" didn't properly generate random initial conditions. Fixed.
!!!V. 1.01
*When "True" was used as an initial condition for external inputs, the generated bit strings of the external input didn't correspond to the true 0/1 state. Fixed.
!!!V. 1.00 April 22, 2009, at 11:29 PM
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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. >><<
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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918.
>><<[[<<]]
April 22, 2009, at 11:26 PM
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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. >>termsOfUse<<
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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. >><<
April 22, 2009, at 11:23 PM
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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918.
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T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. >>termsOfUse<<
April 22, 2009, at 11:19 PM
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>>termsOfUse<< '''Terms Of Use:''' This model [Signal Transduction Model of a Generic Fibroblast Cell]is placed in the public domain for use by the research community.
Publications that result from use of this model should reference the following paper:
T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918.
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>>termsOfUse<< '''Terms Of Use:''' This model [Signal Transduction Model of a Generic Fibroblast Cell]is placed in the public domain for use by the research community.
Publications that result from use of this model should reference the following paper:
T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. to:
!!Recent Versions of ChemChains
!!!V. 1.0
*the initial release of ChemChains
August 26, 2008, at 09:49 AM
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* [[Attach:fibroblast_desc.txt | Network descriptor]] to:
* [[Attach:genericFibroblast_desc.txt | Network descriptor]] August 26, 2008, at 09:48 AM
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* Network descriptor
* Simulation specification file
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* [[Attach:fibroblast_desc.txt | Network descriptor]]
* [[Attach:simulationSpecs.txt | Simulation specification file]]
August 25, 2008, at 03:35 PM
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%define=termsOfUse lframe font-size=smaller bgcolor=e31c1c%
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%define=termsOfUse lframe font-size=smaller bgcolor=#e31c1c%
August 25, 2008, at 03:34 PM
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%define=termsOfUse lframe font-size=smaller bgcolor=red%
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%define=termsOfUse lframe font-size=smaller bgcolor=e31c1c%
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>>termsOfUse<< '''Terms Of Use:''' All data acquired within http://mathbio.unomaha.edu/Database/ (Mathbio) are placed in the public domain for use by the research community.
Publications that result from use of Mathbio should reference the following paper:
to:
>>termsOfUse<< '''Terms Of Use:''' This model [Signal Transduction Model of a Generic Fibroblast Cell]is placed in the public domain for use by the research community.
Publications that result from use of this model should reference the following paper:
August 25, 2008, at 03:32 PM
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%define=termsOfUse lframe font-size=smaller bgcolor=red
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%define=termsOfUse lframe font-size=smaller bgcolor=red%
August 25, 2008, at 03:29 PM
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>>termsOfUse<< '''Terms Of Use:''' All data acquired within http://mathbio.unomaha.edu/Database/ (Mathbio) are placed in the public domain for use by the research community.
Publications that result from use of Mathbio should reference the following paper:
T Helikar, J Konvalina, J Heidel and JA Rogers. 2008. Emergent Decision-making in Biological Signal Transduction Networks. PNAS. Vol.105, No. 6, pp 1914 - 1918. August 25, 2008, at 03:28 PM
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%define=termsOfUse lframe font-size=smaller bgcolor=red
August 25, 2008, at 03:27 PM
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!!!! Signal Transduction Model of a Generic Fibroblast Cell
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!!!! Signal Transduction Model of a Generic Fibroblast Cell
August 25, 2008, at 03:25 PM
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!!! Signal Transduction Model of a Generic Fibroblast Cell
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!!!! Signal Transduction Model of a Generic Fibroblast Cell
August 25, 2008, at 03:25 PM
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You can download ChemChains from [[http://www.bioinformatics.org/project/?group_id=900 | here]]. to:
!! ChemChains Software
You can download ChemChains from [[http://www.bioinformatics.org/project/?group_id=900 | here]].
!! Available Models
!!! Signal Transduction Model of a Generic Fibroblast Cell
* Network descriptor
* Simulation specification file
August 05, 2008, at 03:12 PM
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You can download ChemChains from here. to:
You can download ChemChains from [[http://www.bioinformatics.org/project/?group_id=900 | here]]. July 15, 2008, at 10:59 PM
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You can download ChemChains from here.
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