* Simulation specification file:
* The percentages of all input nodes are generated randomly with noise at level 2.

*                                                 Network Parameters
*********************************************************************
* Iterations
************
* Number of clock ticks to execute in this experiment.
* RunTime:TransientTime:TotalTime
*------------------------------------------------------------------
RunTime:500:800

*Noisy Input modification
*Noise:Window:Scalar
Noise:50:2

* Inputs
********
*Input:name:initial/default value:random(R)/fixed(F):noisy(N)/fixed/(F):time to be introduced (changed from
*initial/default value):dose (in percentage):duration of the change from default (0=1 time) (Dosages can be in multiple *intervals, separated by comma)
*------------------------------------------------------------------------------------------------------


Input:ECM:False:R:N:1:0-100:1999
Input:EGF:False:R:N:1:0-100:1999
Input:ExtPump:False:R:N:1:0-100:1999
Input:alpha_q_lig:False:R:N:1:0-100:1999
Input:alpha_i_lig:False:R:N:1:0-100:1999
Input:alpha_s_lig:False:R:N:1:0-100:1999
Input:alpha_12_13_lig:False:R:N:1:0-100:1999
Input:IL1_TNF:False:R:F:1:0-5:1999
*Stress can be stimulated on its own, but if do IL1_TNF, must also do stress.
Input:Stress:False:R:F:1:0-5:1999



*Mutated nodes
***************
*Node is mutated to be ON or OFF and does not respond to any signal.
*Mutation:ON[OFF]:input1,input2
*---------------------------------------------------------------------
*Mutation:ON:Erk


* Delay nodes
*************
*Receives a signal, but don't respond immediately. Specify how long to wait.
*Delay:name:initial value:input:iterations to wait
*---------------------------------------------------------------------


*Sustain nodes
**************
*Receives a signal and then responds for some period of time regardless of
*other additional inputs.
*Sustain:name:initial/default value:duration:input
*----------------------------------------------------------------------


* Outputs
*********
*Output nodes are the end result. They just mirror their inputs.
*Output:name:initial/default condition:input
*----------------------------------------------------------------

Output:1_EGFR:True:EGFR