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Main.BIOL595 History
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May 06, 2009, at 08:14 PM
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Credits: 3 Location: Milbank 403 Time: Wed,3-6pm pm
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May 06, 2009, at 03:25 PM
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Special Readings
- Special readings
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May 06, 2009, at 03:24 PM
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Please turn in your homework 1 and your solution to quiz1.
Graduating seniors should write a one-page summary on the paper, Kim, et al, 2006, Science. "Relating 3-dimentioal structures to protein networks provides evolutionary insights". Your summary should explain the key findings and methods used, point out a few weakness.
Quiz2 on April 8 on distance, distance matrix, and clustering
Survey on April 8
April 14, 2009, at 10:53 PM
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- Regression, Peanut genotypes and phenotypes association;
April 14, 2009, at 10:48 PM
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April 14, 2009, at 10:47 PM
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April 07, 2009, at 09:14 PM
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April 01, 2009, at 10:27 AM
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- Modeling of aging and genetic changes;
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- Modeling of aging and genetic changes;
March 31, 2009, at 10:12 PM
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Quiz2 on April 8
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Quiz2 on April 8 on distance, distance matrix, and clustering
March 31, 2009, at 09:57 PM
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Survey on April 8
March 31, 2009, at 09:49 PM
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- Probability and likelihood estimation; Models on aging;
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- Modeling of aging and genetic changes;
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- Probability and likelihood estimation;
March 18, 2009, at 03:02 PM
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Quiz2 on April 8
March 18, 2009, at 03:01 PM
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%Graduating seniors should write a one-page summary on the paper, Kim, et al, 2006, Science. "Relating 3-dimentioal structures to protein networks provides evolutionary insights". Your summary should explain the key findings and methods used, point out a few weakness.
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Graduating seniors should write a one-page summary on the paper, Kim, et al, 2006, Science. "Relating 3-dimentioal structures to protein networks provides evolutionary insights". Your summary should explain the key findings and methods used, point out a few weakness.
March 18, 2009, at 03:00 PM
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%Graduating seniors should write a one-page summary on the paper, Kim, et al, 2006, Science. "Relating 3-dimentioal structures to protein networks provides evolutionary insights". Your summary should explain the key findings and methods used, point out a few weakness.
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- Protein structure and protein networks, (Graduating seniors should write a one-page summary on the paper, Kim, et al, 2006, Science. "Relating 3-dimentioal structures to protein networks provides evolutionary insights". Your summary should explain the key findings and methods used, point out a few shortcomings )
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- Protein structure and protein networks, (Graduating seniors should write a one-page summary on the paper, Kim, et al, 2006, Science. "Relating 3-dimentioal structures to protein networks provides evolutionary insights". Your summary should explain the key findings and methods used, point out a few weakness. )
March 18, 2009, at 02:43 PM
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- Protein structure and protein networks, (Graduating seniors should write a one-page summary on the paper, Kim, et al, 2006, Science. "Relating 3-dimentioal structures to protein networks provides evolutionary insights". Your summary should explain the key findings and methods used, point out a few shortcomings )
March 18, 2009, at 12:42 PM
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- Libya HIV case;
- distance matrix and gene expression analysis; Prostate cancer data
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- Microarry, clustering analysis, Prostate cancer case;
March 18, 2009, at 12:41 PM
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March 11, 2009, at 03:37 PM
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- more on distance matrix and phylogeny Libya HIV case;
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March 11, 2009, at 01:16 PM
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Special Readings
- Special readings
February 26, 2009, at 03:18 PM
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- Probability and likelihood estimation; Models on aging;
- Regression analysis
February 22, 2009, at 05:24 PM
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- distance between sequences, distance matrix and phylogeny; 2003 SARS outbreak; riddle of the giant panda;
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- distance between sequences, distance matrix and phylogeny; 2003 SARS outbreak; riddle of the giant panda;
February 22, 2009, at 05:20 PM
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- t-test and p-value distance between sequences, distance matrix and phylogeny; 2003 SARS outbreak; riddle of the giant panda;
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- distance between sequences, distance matrix and phylogeny; 2003 SARS outbreak; riddle of the giant panda;
February 22, 2009, at 05:20 PM
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- distance between sequences
- distance matrix, clustering, and trees; Libya HIV case; SARS 2003 outbreak
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- t-test and p-value distance between sequences, distance matrix and phylogeny; 2003 SARS outbreak; riddle of the giant panda;
- more on distance matrix and phylogeny Libya HIV case;
February 18, 2009, at 02:49 PM
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Please turn in your homework 1. Arrange for make-up quizs.
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Please turn in your homework 1 and your solution to quiz1.
February 18, 2009, at 02:48 PM
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Announcment: Quiz on Feb 11 (topics:function,loops,input,output)
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Please turn in your homework 1. Arrange for make-up quizs.
February 18, 2009, at 02:39 PM
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- quiz1 (functions, loops, input, output)
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- Quiz1 (functions, loops, input, output)
February 11, 2009, at 07:56 PM
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- quiz1 (functions, loops, input, output)
February 11, 2009, at 07:56 PM
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February 11, 2009, at 12:40 AM
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- distance matrix and trees; Libya HIV case; SARS 2003 outbreak
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- distance matrix, clustering, and trees; Libya HIV case; SARS 2003 outbreak
February 11, 2009, at 12:23 AM
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- distance between sequences
- distance matrix and trees; Libya HIV case; SARS 2003 outbreak
- distance matrix and gene expression analysis; Prostate cancer data
February 07, 2009, at 10:48 PM
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- Computational thinking and p-value; t-test and p-value
February 07, 2009, at 10:45 PM
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February 04, 2009, at 04:03 PM
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February 04, 2009, at 03:49 PM
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Announcment: Quiz on Feb 11 (topics:function,loops,input,output)
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- Input, ouput, plot, packages
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February 04, 2009, at 11:10 AM
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February 04, 2009, at 11:09 AM
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- Input, ouput, plot, packages
January 21, 2009, at 11:03 PM
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January 21, 2009, at 11:00 PM
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January 21, 2009, at 04:08 PM
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January 20, 2009, at 10:41 PM
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- An overview R
- Basic programming in R
January 20, 2009, at 11:25 AM
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- Kelly 2008 Light drinking in pregnancy, a risk forbehavioural problems and cognitive deficits at 3 years of age?
January 14, 2009, at 10:34 AM
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This course is based on case studies and projects. We will mainly use R throughout this course. Basic Linux will also be introduced. Other necessary software tools (such as MEGA) will also be used.
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This course is based on case studies and projects. We will mainly use R throughout this course. Basic Linux will also be introduced. Other necessary software tools, such as MEGA and BLAST will also be used.
January 14, 2009, at 10:33 AM
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Time: Wed, Thu, 3pm-4:30pm (We will discuss the schedule on the first lecture)
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January 14, 2009, at 10:30 AM
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January 12, 2009, at 06:02 PM
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January 12, 2009, at 05:46 PM
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January 09, 2009, at 11:43 AM
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- http://ocw.mit.edu/OcwWeb/Electrical-Engineering-and-Computer-Science/6-895Fall-2005/LectureNotes/index.htm
January 09, 2009, at 11:33 AM
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- http://www.sys-bio.org/index.htm
January 09, 2009, at 11:27 AM
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- http://www.sys-bio.org/sbwWiki/sysbiolabmembers/498_systems_and_synthetic_biology_spring_2008
January 09, 2009, at 11:11 AM
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January 09, 2009, at 11:10 AM
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- http://ocw.mit.edu/ans7870/6/6.891/f04/labs/laboratory2.htm
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- http://ocw.mit.edu/ans7870/6/6.891/f04/labs/lab1.html
- http://ocw.mit.edu/ans7870/6/6.891/f04/labs/laboratory2.htm
January 09, 2009, at 11:07 AM
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- Human metabolic profile variation
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- Human metabolic profile variation
Relative sites:
- http://ocw.mit.edu/ans7870/6/6.891/f04/labs/laboratory2.htm
January 07, 2009, at 03:44 PM
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January 07, 2009, at 03:44 PM
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Time: Wed, Thu, 3pm-4:30pm (We will discuss the schedule on the first class)
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Time: Wed, Thu, 3pm-4:30pm (We will discuss the schedule on the first lecture)
January 07, 2009, at 01:33 PM
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This course is based on case studies and projects. We will mainly use R throughout this course. Basic Linux will also be introduced.
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This course is based on case studies and projects. We will mainly use R throughout this course. Basic Linux will also be introduced. Other necessary software tools (such as MEGA) will also be used.
January 07, 2009, at 01:32 PM
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Time: Wed, Thu, 3pm-4:30pm (We discuss the schedule on the first class)
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Time: Wed, Thu, 3pm-4:30pm (We will discuss the schedule on the first class)
January 07, 2009, at 01:32 PM
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Time: Wed, Thu, 3pm-4:30pm.
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Time: Wed, Thu, 3pm-4:30pm (We discuss the schedule on the first class)
January 07, 2009, at 01:04 PM
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January 07, 2009, at 12:58 PM
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- Contributed docs on R at CRAN
January 07, 2009, at 12:57 PM
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January 07, 2009, at 12:49 PM
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- Libya HIV
- yeast tiling array
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January 07, 2009, at 12:45 PM
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Papers
January 07, 2009, at 12:45 PM
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Software tools
January 07, 2009, at 12:44 PM
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January 07, 2009, at 12:37 PM
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Lectures and labs
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Reading materials:
January 07, 2009, at 12:36 PM
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This course is based on case studies and projects. We will mainly use R throughout this course. Basic Linux will also be introduced.
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This course is based on case studies and projects. We will mainly use R throughout this course. Basic Linux will also be introduced.
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January 05, 2009, at 02:42 PM
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January 05, 2009, at 02:42 PM
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January 05, 2009, at 02:42 PM
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January 04, 2009, at 10:21 PM
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Time: Schedule will be decided by interested students. Tentatively Wed, Thu, 3pm-4:30pm.
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Time: Wed, Thu, 3pm-4:30pm.
December 01, 2008, at 12:21 AM
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Papers
- Human metabolic profile variation
November 24, 2008, at 11:28 AM
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Reading materials:
- An Introduction to R, pdf
- R, UW
- R online tutorial, ISU
- R online tutorial, Mercury
- Programming in R, UC Riverside
November 17, 2008, at 02:51 PM
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Time: Tentatively Wed, Thu, 3pm-4:30pm.
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Time: Schedule will be decided by interested students. Tentatively Wed, Thu, 3pm-4:30pm.
November 17, 2008, at 02:50 PM
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November 17, 2008, at 02:50 PM
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Time: Tentatively Wed, Thu, 3pm-4:30pm.
November 17, 2008, at 11:35 AM
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This course is based on case studies and projects. We will mainly use R throughout this course.
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This course is based on case studies and projects. We will mainly use R throughout this course. Basic Linux will also be introduced.
November 17, 2008, at 11:35 AM
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This project based course will focus on case studies. We will mainly use R throughout this course.
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This course is based on case studies and projects. We will mainly use R throughout this course.
November 17, 2008, at 11:34 AM
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November 17, 2008, at 11:34 AM
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This project based course will focus on case studies. We will mainly use R throughout this course.
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This project based course will focus on case studies. We will mainly use R throughout this course.
November 17, 2008, at 11:34 AM
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Location: Milbank 403 \\
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November 17, 2008, at 11:33 AM
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November 17, 2008, at 11:33 AM
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Credit: 3
Mon, Wed, 3-4:30pm
Location: Milbank 403
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Credit: 3 Mon, Wed, 3-4:30pm Location: Milbank 403
November 17, 2008, at 11:33 AM
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Computing in Life Sciences, Spring 2009
Credit: 3
Mon, Wed, 3-4:30pm
Location: Milbank 403
This project based course will focus on case studies. We will mainly use R throughout this course.
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