* http://leighvanvalen.com/songs/

* [[http://hackeducation.com/2012/04/30/the-quantified-self-and-learning-analytics/ | Hack Education blog]]

!! Mentoring
* [[http://www.nap.edu/openbook.php?record_id=5789&page=3 | Adviser, Teacher, Role Model, Friend: On Being a Mentor to Students in Science and Engineering (1997) ]]

----

* [[http://larrycuban.wordpress.com/2012/04/15/student-learning-styles-theory-is-bunk-daniel-willingham/ | Larry Cuban on teaching ]]

* [[http://membercentral.aaas.org/categories/biology |AAAS Blogs ]]

* [[http://hint.fm/wind/ | Wind map, an example of a dynamic system]]

* [[http://htwins.net/scale2/ | scale of universe (good animation)]]

* [[http://www.csb.utoronto.ca/undergraduate/courses/300 | Toronto, Dep of Cell & Systems Biology]]

!! Systems Biology
* [[http://isites.harvard.edu/icb/icb.do?keyword=k52908 | Harvard MCB 195]]


----

!! Integrative biology and the future of biology

Integrative biology and the future of biology
* [[http://icb.oxfordjournals.org/content/43/2/239.full | what is integrated biology]]
* [[http://onlinelibrary.wiley.com/doi/10.1002/bies.201190023/abstract | Physical Biology by Rutherford]]

----

* [[http://www.nslij-genetics.org/bioinfotraining/ | A list of bioinformatics courses & degress]]

* http://www.lessonplansinc.com/biology_lesson_plans_darwin_evolution.php

* http://www.indiana.edu/~ensiweb/lessons/ns.cum.l.html It in the Cards;

!! Undergraduate programs related to computational biology
* Wyne state?
* USC


----

----
!! Teaching Evolution

* http://www.nap.edu/openbook.php?record_id=5787
* http://www.indiana.edu/~ensiweb/

----Teaching Evolution
* http://serc.carleton.edu/NAGTWorkshops/affective/evolution.html structured academic controversies

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* [[http://biostar.stackexchange.com/ | Biostar ]]

* [[http://bioinformatics.msu.edu/ngs-summer-course-2011 | NGS sequence analysis, MSU ]]

----
!! On the social issues of education
* [[http://www.nytimes.com/2011/12/12/opinion/the-unaddressed-link-between-poverty-and-education.html?_r=1&hp | Class Matters. Why Won’t We Admit It?]]
* [[http://www.nytimes.com/pages/education/index.html | NY Times, Education]]


----

!! On the social issues of education

* [[http://www.nytimes.com/pages/education/index.html | NY Times, Education]]

* [[http://p2pu.org/en/ | Peer-to-Peer University]]

!! On the inequalities of education
* [[http://www.nytimes.com/2011/12/12/opinion/the-unaddressed-link-between-poverty-and-education.html?_r=1&hp | Class Matters. Why Won’t We Admit It?]]

----

* [[http://ibiomagazine.org/ | iBioMagzine]]

!! On teaching methodology and education practices
* [[http://www.knewton.com/flipped-classroom/ | Flipped classroom ]]
* [[http://www.hhmi.org/annualreport2010/foundations-of-scholarship/building-bio-2020.php | HHMI bio 2020]]
* [[ http://www.utc.edu/Administration/WalkerTeachingResourceCenter/FacultyDevelopment/TeachingTips.php | teaching tips at UTC ]]
* [[http://teaching.uncc.edu/resources/best-practice-articles/course-development/best-practices | UNCC resources]]
* [[http://www.gmu.edu/resources/facstaff/part-time/strategy.html | GMU ]]
* [[ http://derekbruff.com/teachingwithcrs/ | Derek Bruff: Teaching with classroom response systems ]]
* [[http://www.springerlink.com/index/18876t1564x8705j.pdf | Clickers in the large classroom: current research and best-practice tips, JE Caldwell - Life Sciences Education, 2007]]
* [[http://www.lifescied.org/cgi/content/abstract/6/1/9 | Classroom response systems: A review of the literature, C Fies… - Journal of Science Education and Technology, 2006 - Springer]]
* http://en.wikipedia.org/wiki/Grade_inflation
* BIO2010: Transforming Undergraduate Education for Future Research Biologists. National Academies report (2003) encouraging interdisciplinary education (http://www.nap.edu/openbook.php?isbn=0309085357)
* Vision and Change Transforming Undergraduate Education in Biology: Mobilizing the Community for Change (http://www.visionandchange.org/) Reports on conversations to reinvigorate undergraduate biology education.
* Scientific Foundations for Future Physicians (HHMI and AAMC) (http://www.hhmi.org/grants/sffp.html) Report on both medical school and undergraduate competencies for educating physicians.
* Transforming Agricultural Education for a Changing World. (http://www.nap.edu/catalog.php?record_id=12602) National Academies Report encouraging move towards broader education for agriculture students.
* [[http://rer.sagepub.com/content/41/5/511.extract | RER ]]
* [[http://mtprof.msun.edu/Fall1997/HOWTORAI.html | Writing by Paul Trout ]]
* [[http://www.slideshare.net/millerj870/towards-bio2020-educating-biologists-mathematicians-and-computer-scientists-collaborating-to-redesign-education-content-and-pedagogy | Bio 2020, Jason Miller]]
* [[http://www.thedailybeast.com/newsweek/2010/10/28/what-kids-should-really-learn-in-science-class.html?fb_ref=articlepage&fb_source=profile_multiline | Avoid BS in Science]]



----

* [[http://www.knewton.com/flipped-classroom/ | Flipped classroom ]]

!! K12 education

* [[http://fc.dekalb.k12.ga.us/~robert_l_hairston/ | Robert Hairston, Cedar Grove, Atlanta]]

!!Simulation tools for teaching evolution
* [[http://boxcar2d.com/derpBikeDesigner.html | boxcar2d ]]
* [[http://www.cambrianexplosion.com | simulate species evolution]]
* Avida-ED
evolution games

----

----
!! Views on computers in K12 education
* [[http://www.nytimes.com/2011/10/23/technology/at-waldorf-school-in-silicon-valley-technology-can-wait.html?_r=1&hp | Waldorf mehod, NYTimes ]]
* [[http://en.wikipedia.org/wiki/Waldorf_education | Waldor education on wikipedia]]

* [[http://www.cambrianexplosion.com | simulate species evolution]]

!!Simulation tools for teaching evolution

* [[www.cambrianexplosion.com | simulate species evolution]]

!!Simulation tools for education
* [[http://boxcar2d.com/derpBikeDesigner.html | boxcar2d ]]
* www.cambrianexplosion.com
* Avida-ED
evolution games
growing bettles


----

* [[http://www.youtube.com/watch?v=3gRQsBZSxUo&feature=related | Linear regression in R]]

!! R
* [[http://www.youtube.com/watch?v=ZoPJGmpYJzw&feature=related | youtube R tutorials]]

----

* [[http://bodegaphylo.wikispot.org/III._Loading_Character_Data_into_R | Bodega Applied Phylogenetics Workshop]]

* youtube.com (You just have to search for the key words)

* [[http://nimbios.org/tutorials/ | Nimbios @ UTK ]]

!! On teaching methodology and education practices
* [[http://www.hhmi.org/annualreport2010/foundations-of-scholarship/building-bio-2020.php | HHMI bio 2020]]

* [[http://www.thedailybeast.com/newsweek/2010/10/28/what-kids-should-really-learn-in-science-class.html?fb_ref=articlepage&fb_source=profile_multiline | Avoid BS in Science]]

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* [[http://onlinelibrary.wiley.com/doi/10.1002/bies.201190023/abstract | Physical Biology by Rutherford]]

The future of biology

* [[http://onlinelibrary.wiley.com/doi/10.1002/bies.201190023/abstract | Physical Biology by Rutherfor]]

* [[http://onlinelibrary.wiley.com/doi/10.1002/bies.201190023/abstrac | Physical Biology by Rutherfor]]

Views on integrated science:

* Introductory Science and Mathematics Education for 21st-Century Biologists William Bialek and David Botstein, Science 6 February 2004: 788-790.

* http://www.sciencemag.org/content/303/5659/788/reply, José Alexandre Felizola Diniz-Filho's view
* http://www.nature.com/nrm/journal/v7/n11/pdf/nrm2023.pdf, Wingree, Botstein, 2006

* http://www.nature.com/nrm/journal/v7/n11/pdf/nrm2023.pdf, Wingree, Botstein, 2006
* http://www.ncbi.nlm.nih.gov/pmc/articles/PMC437648/ Gross's countering view.Quite interesting.

* The Joint Science Department at Claremont McKenna, Pitzer, and Scipps Colleges

* [[http://www.slideshare.net/millerj870/towards-bio2020-educating-biologists-mathematicians-and-computer-scientists-collaborating-to-redesign-education-content-and-pedagogy | Bio 2020, Jason Miller]]
* [[http://www.hhmi.org/annualreport2010/foundations-of-scholarship/building-bio-2020.php | HHMI bio 2020]]

* [[http://www.slideshare.net/millerj870/towards-bio2020-educating-biologists-mathematicians-and-computer-scientists-collaborating-to-redesign-education-content-and-pedagogy | Bio 2020]]

!! On teaching methodology

* [[http://www.springerlink.com/index/18876t1564x8705j.pdf | Clickers in the large classroom: current research and best-practice tips, JE Caldwell - Life Sciences Education, 2007]]
* [[http://www.lifescied.org/cgi/content/abstract/6/1/9 | Classroom response systems: A review of the literature, C Fies… - Journal of Science Education and Technology, 2006 - Springer]]

* [[http://mtprof.msun.edu/Fall1997/HOWTORAI.html | Writing by Paul Trout ]]

* [[http://teaching.uncc.edu/resources/best-practice-articles/course-development/best-practices | UNCC resources]]
* [[http://www.gmu.edu/resources/facstaff/part-time/strategy.html | GMU ]]

* [[http://rer.sagepub.com/content/41/5/511.extract | RER ]]

* [[http://www.smb.org/ | SMB ]]

-----
!!Some kits
* [[http://www.carolina.com/product/dna+chips-+genes+to+disease+lab+kit.do?keyword=21-1520&sortby=bestMatches | DNA Chip genes to diesease kit ]]

* [[http://www.nimbios.org/education/NABT_supplement.html | Nimbios on computational thinking ]]

* BIO2010: Transforming Undergraduate Education for Future Research Biologists. National Academies report (2003) encouraging interdisciplinary education (http://www.nap.edu/openbook.php?isbn=0309085357)

* Vision and Change Transforming Undergraduate Education in Biology: Mobilizing the Community for Change (http://www.visionandchange.org/) Reports on conversations to reinvigorate undergraduate biology education.

* Scientific Foundations for Future Physicians (HHMI and AAMC) (http://www.hhmi.org/grants/sffp.html) Report on both medical school and undergraduate competencies for educating physicians.

* Transforming Agricultural Education for a Changing World. (http://www.nap.edu/catalog.php?record_id=12602) National Academies Report encouraging move towards broader education for agriculture students.

* http://www.spaceandmotion.com/Philosophy-Education.htm

* http://research-education-edu.blogspot.com/

* [[Plato's Academy and higher learning]]
* [[Confucius]]

* http://en.wikipedia.org/wiki/Philosophy_of_education

!!On the nature of education
* Plato
* Confucius

----

* http://en.wikipedia.org/wiki/Grade_inflation

* [[http://ocw.mit.edu/OcwWeb/ | MIT Open course ware]]

!!Genomics, Bioinformatics, Computational Biology

* [[http://pevsnerlab.kennedykrieger.org/bioinfo_course.htm | Pevsner's Bioinformatics course site]]
* [[http://www.dnai.org/ | DNA Interactive, CSHL]]
* [[http://www.dynamicgene.org/structure/structure.html | Dynamic Gene Structure, CSHL]]
* [[http://gep.wustl.edu/curriculum/course_materials0.php | Genomics education partnership at WUSTL]]
* [[http://www.bio.davidson.edu/courses/genomics/genomics.html | Genomics @ Davidson]]

* [[http://www.isp.northwestern.edu/ | Integrated Science program at Northwestern University]]
* [[http://www.isat.jmu.edu/ | JMU program]]

* [[http://www.science.vt.edu/isc/index.html | Integrated Science program at Virgina Tech]]

* Integrated Science [Book] by Bill W Tillery, Eldon Enger, Frederick C Ross
* The sciences: an integrated approach [Book] by James S. Trefil, Robert M. Hazen

* Integrated Science [Book] by Bill W Tillery, Eldon Enger, Frederick C Ross in Books

* [[http://www.princeton.edu/integratedscience/ | Integrated Science program at Princeton]]
* [[www.isp.northwestern.edu/ | Integrated Science program at Virgina Tech]]
* [[http://www.isp.northwestern.edu/ Integrated Science program at Northwestern University]]
* [[http://www.isat.jmu.edu/ | JMU]]
* Integrated Science: New Approaches to Education, book by Michael C. Shaw

!! Integrated Science
* [[Integrated Science program at Princeton]]
* [[Integrated Science program at Virgina Tech]]
* [[Integrated Science program at Northwestern University]]

----

!!General Science-related sites
* [[http://www.ted.com/ | TED]]
* [[http://worldsciencefestival.com/ | World Science Festival Video]]

----
!!General teaching sites
* iTunes U
* [[http://videolectures.net/ | Videolectures]]
* [[http://www.bioquest.org/| Bioquest]]
* [[http://www.nature.com/scitable/topics | Scitable by Nature Education]]
* [[http://www.bio.davidson.edu/people/macampbell/macampbell.html | A Malcolm Campbell's site]]
* [[https://sites.google.com/site/lclarkbioinf/structure-prediction | Jonathan Visick's workshops]]
* [[http://ocw.mit.edu/OcwWeb/ | MIT Open course ware]]
* [[http://secant.cs.purdue.edu/cs190c:notes | Purdue Computational thinking ]]
* [[http://pevsnerlab.kennedykrieger.org/bioinfo_course.htm | Pevsner's Bioinformatics course site]]
* [[http://www.geospiza.com/education/index.html | Geospiza Teaching Materials]]
* [[http://nhscience.lonestar.edu/biol/bio1int.htm | Biology animation collections ]]
* [[http://biologyinmotion.com/about.html | Biology in Motion ]]
* [[http://www.khanacademy.org/ | Khan Academy ]]
* [[http://www.sumanasinc.com/webcontent/animation.html | Animation collection, Sumanas ]]



----
!!Genomics
* [[http://www.dnai.org/ | DNA Interactive, CSHL]]
* [[http://www.dynamicgene.org/structure/structure.html | Dynamic Gene Structure, CSHL]]
* [[http://gep.wustl.edu/curriculum/course_materials0.php | Genomics education partnership at WUSTL]]
* [[http://www.bio.davidson.edu/courses/genomics/genomics.html | Genomics @ Davidson]]


----
!!Bioinformatics, Computational Biology
* [[https://sites.google.com/site/lclarkbioinf/ | Bioinformatics @ Lewis and Clark]]
* [[http://www.bioalgorithms.info | Bioinformatics Algorithm, Jones & Pevzner]]
* http://wiki.bioinformatics.org/Bioinformatics_(book_list)
* [[http://www.bioinformaticsonline.org/ | Bioinformatics Sequence and Genome Analysis, DW Mount]]
* [[http://www.avatar.se/molbioinfo2001/ | Molecular Bioinformatics 2001, Uppsala University]]
* [[ http://www.stat.wisc.edu/~deepayan/SIBS2005/ | Biostatistics and R, UW Deepanyan Sarkar]]
* [[http://ai.stanford.edu/~serafim/courses.html| Batzoglou's course site ]]
* [[http://modem.ucsd.edu/bioinf184/index.html | Wei Wang's comp biol courses ]]

----
!! Quantitative and Mathematical Biology
* [[http://www.bioquest.org/scope/| SCOPE]]
* [[http://mathbench.umd.edu/| Mathbench ]]

Advanced levels
* [[https://sites.google.com/a/wmbiomath.org/cshlccb/ | CSHL CCB course]]
* [[http://www.math.rutgers.edu/~sontag/ | Eduardo Sontag's site]]


----
!!Structure analysis
* [[http://www.usm.maine.edu/~rhodes/Biochem/index.html | Gale Rhodes, Protein structure, biochemistry]]
* [[ http://bioinformatics.burnham.org/~natasha/modeling.html | SWISS Molder, Adam Godzik]]

----
!! Molecular Evolution
* [[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Phylogenetics:_Syllabus | Paul Lewis, Phylogeny]]
* [[http://phylo.bio.ku.edu/courses/phylomethods | Holder, Phylogeny]]
* [[http://www.molecularevolution.org/ | Molecular.Evolution.org]]
* [[http://molevol.mbl.edu/wiki/index.php/Schedule | Woodhole workshop ]]

----
!! Synthetic Biology
* [[http://www.leukippos.org/Leukippos_Institute/Blog/Entries/2011/4/6_Ten_important_Synthetic_Biology_papers.html | Leukippos Blog ]]

----
!!Advanced topics:
* [[http://www.cs.yale.edu/homes/spielman/462/ | Spielman's spectral graph ]]
* [[http://www.math.ucsd.edu/~fan/cbms.pdf | Chung's spectral graph ]]
* [[http://www.cedar.buffalo.edu/~srihari/CSE574/ | Srihari's machine learning ]]

----
!!Biology course materials
* [[http://www.bioquest.org/| Bioquest]]
-----
!!Some kits
* [[http://www.carolina.com/product/dna+chips-+genes+to+disease+lab+kit.do?keyword=21-1520&sortby=bestMatches | DNA Chip genes to diesease kit ]]

----
!!Teaching resources
* [[ http://www.utc.edu/Administration/WalkerTeachingResourceCenter/FacultyDevelopment/TeachingTips.php | teaching tips at UTC ]]

* [[ http://derekbruff.com/teachingwithcrs/ | Derek Bruff: Teaching with classroom response systems ]]

----
!!Miscellaneous
* [[http://www.cc.gatech.edu/faculty/ashwin/wisdom/how-to-present-a-paper.html | How to present a paper, Ashwin Ram ]]
* [[http://www.leighthompson.com/tips/present_a_paper.htm | How to present a paper, ]]