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February 14, 2012, at 06:01 PM by 79.204.233.35 -
Changed lines 7-9 from:
* source code, [[documentation]], and sample files can be downloaded at the [[http://ftp.bioinformatics.org/pub/cyntenator/ | ftp site ]]

to:
* source code, [[documentation]], and sample files can be downloaded at the [[http://www.bioinformatics.org/ftp/pub/cyntenator/ | ftp site ]]

February 05, 2010, at 06:02 PM by 85.178.81.113 - Paper accepted
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The source code, [[documentation]], and sample files can be downloaded at the ftp site

[[http://ftp.bioinformatics.org/pub/cyntenator/]]


to:
* CYNTENATOR manuscript has now been publised in PLoS ONE: [[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0008861 | Rödelsperger and Dieterich, 2010]]

* source code, [[documentation]], and sample files can be downloaded at the [[http://ftp.bioinformatics.org/pub/cyntenator/ | ftp site ]]

August 17, 2009, at 04:18 AM by 193.175.73.206 -
Added lines 1-3:
!! Cyntenator : Progressive Gene Order Alignments

Cyntenator is a software for identification of conserved syntenic blocks between multiple genomes. The program computes Smith-Waterman alignments of sequences, whereby the alphabet consists of all annotated genes and the scoring system is defined by protein sequence similarities and distances between species in a phylogenetic tree. The algorithm is an extension of the Syntenator partial order aligner, described in [[http://www.almob.org/content/3/1/14 | Rödelsperger and Dieterich, 2008]].