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A B C D E F G H I J L M N O P Q R S T U V W X Z

## A

actionPerformed(ActionEvent) - Method in class example.GUIExample
addDataToPool(Object) - Method in class edu.hust.go.model.GoParser
addPort() - Method in class edu.hust.go.gui.GoCell
addTermToMap(Object, byte) - Method in class edu.hust.go.model.GoParser
alt_id - Variable in class edu.hust.go.term.OBOGO_term
alt_id - Variable in class edu.hust.go.term.OboXmlGo_term
APPROVE_OPTION - Static variable in class edu.hust.go.gui.OpenPageDialog
association - Variable in class edu.hust.go.term.RdfXmlGo_term
attributeDecl(String, String, String, String, String) - Method in class edu.hust.go.model.XmlGoParser

## B

broad_synonym - Variable in class edu.hust.go.term.OBOGO_term
buildSubGraph(ArrayList, int, int) - Method in class edu.hust.go.model.GoGraphModel
  extract sub graph from GO graph, the sub graph contains a set of target go terms , and related in the pathway from the root to its leaf nodes, for example, one pathway is A->B->C->Target->D->E->F, while A is root and F is leaf, and suppose parentLevel and childLevel are both 1, then the nodes C, Taraget, and D are extracted intio the subGraph, the the related edges are extracted into the subGraph too.

## C

CANCEL_OPTION - Static variable in class edu.hust.go.gui.OpenPageDialog
CAO - Static variable in class edu.hust.go.model.Similarity
characters(char[], int, int) - Method in class edu.hust.go.model.XmlGoParser
childLevleComboBox - Variable in class example.GUIExample
chindLevel - Variable in class example.GUIExample
clone() - Method in class edu.hust.go.gui.GoCell
comment - Variable in class edu.hust.go.term.OBOGO_term
comment - Variable in class edu.hust.go.term.OboXmlGo_term
comment - Variable in class edu.hust.go.term.RdfXmlGo_term
comment(char[], int, int) - Method in class edu.hust.go.model.XmlGoParser
createView(GoGraphModel, ArrayList, byte, int, int) - Static method in class edu.hust.go.gui.GraphCreator
  Construct GUI by GO terms
curDocument - Variable in class edu.hust.go.model.XmlGoParser
curElement - Variable in class edu.hust.go.model.XmlGoParser

## D

dataPool - Variable in class edu.hust.go.model.GoParser
dbxref - Variable in class edu.hust.go.term.OboXmlGo_term.Def
dbxref - Variable in class edu.hust.go.term.OboXmlGo_term.Synonym
dbxref - Variable in class edu.hust.go.term.RdfXmlGo_term
def - Variable in class edu.hust.go.term.DefaultGO_term
DefaultGO_term - class edu.hust.go.term.DefaultGO_term.
DefaultGO_term() - Constructor for class edu.hust.go.term.DefaultGO_term
defaultPoolSize - Static variable in class edu.hust.go.model.GoParser
defaultThreadNumber - Static variable in class edu.hust.go.model.GoParser
definition - Variable in class edu.hust.go.term.OboXmlGo_term
defStr - Variable in class edu.hust.go.term.OboXmlGo_term.Def

## E

edu.hust.go.gui - package edu.hust.go.gui
edu.hust.go.model - package edu.hust.go.model
edu.hust.go.term - package edu.hust.go.term
elementDecl(String, String) - Method in class edu.hust.go.model.XmlGoParser
endCDATA() - Method in class edu.hust.go.model.XmlGoParser
endDocument() - Method in class edu.hust.go.model.XmlGoParser
endDTD() - Method in class edu.hust.go.model.XmlGoParser
endElement(String, String, String) - Method in class edu.hust.go.model.XmlGoParser
endEntity(String) - Method in class edu.hust.go.model.XmlGoParser
endPrefixMapping(String) - Method in class edu.hust.go.model.XmlGoParser
error(SAXParseException) - Method in class edu.hust.go.model.XmlGoParser
evalSimilarity(GO_term, GO_term) - Method in class edu.hust.go.model.GoGraphModel
evalSimilarity(GO_term, GO_term, byte) - Method in class edu.hust.go.model.GoGraphModel
  evaluate the similarity of two nodes in directed acylic graph
evaluate(GoGraphModel, Object, Object, byte) - Static method in class edu.hust.go.model.Similarity
  evaluate the similarity of two nodes in directed acylic graph
exact_synonym - Variable in class edu.hust.go.term.OBOGO_term
example - package example
externalEntityDecl(String, String, String) - Method in class edu.hust.go.model.XmlGoParser

## F

fatalError(SAXParseException) - Method in class edu.hust.go.model.XmlGoParser
focus - Variable in class edu.hust.go.term.RdfXmlGo_term

## G

getAlt_id() - Method in class edu.hust.go.term.OboXmlGo_term
getAssociation() - Method in class edu.hust.go.term.RdfXmlGo_term
getComment() - Method in class edu.hust.go.term.OboXmlGo_term
getComment() - Method in class edu.hust.go.term.RdfXmlGo_term
getCommonElements(Object[][], HashMap) - Static method in class edu.hust.go.model.GraphPath
getCommonElements(Object[], Object[]) - Static method in class edu.hust.go.model.GraphPath
getCommonParents(ArrayList) - Method in class edu.hust.go.model.GoGraphModel
  get the common parents in the pathway of target go terms.
getDataFromPool() - Method in class edu.hust.go.model.GoParser
getDbxref() - Method in class edu.hust.go.term.RdfXmlGo_term
getDef() - Method in class edu.hust.go.term.DefaultGO_term
getDef() - Method in interface edu.hust.go.term.GO_term
getDefinition() - Method in class edu.hust.go.term.OboXmlGo_term
getGoTermById(String) - Method in class edu.hust.go.model.GoParser
getGoTermById(String) - Method in class edu.hust.go.model.OboGoParser
getGoTermById(String) - Method in class edu.hust.go.model.OboXmlGoParser
getGoTermById(String) - Method in class edu.hust.go.model.OwlGoParser
getGoTermById(String) - Method in class edu.hust.go.model.RdfXmlGoParser
getGraph() - Method in class edu.hust.go.model.GoGraphModel
  get the whole GO graph
getHistory() - Method in class edu.hust.go.term.RdfXmlGo_term
getId() - Method in class edu.hust.go.term.DefaultGO_term
getId() - Method in interface edu.hust.go.term.GO_term
getIntersection_of() - Method in class edu.hust.go.term.OboXmlGo_term
getIs_a() - Method in class edu.hust.go.term.DefaultGO_term
getIs_a() - Method in interface edu.hust.go.term.GO_term
getLeave(SimpleDirectedGraph) - Static method in class edu.hust.go.model.GoGraphModel
  the leave are defindes as the nodes which has no outgoing edges.
getLexical_category() - Method in class edu.hust.go.term.OboXmlGo_term
getN_associations() - Method in class edu.hust.go.term.RdfXmlGo_term
getName() - Method in class edu.hust.go.term.DefaultGO_term
getName() - Method in interface edu.hust.go.term.GO_term
getNamespace() - Method in class edu.hust.go.term.OboXmlGo_term
getNodeAllChildren(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
getNodeAllParents(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
getNodeChildren(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
getNodeParents(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
getObsoleteSet() - Method in class edu.hust.go.model.GoGraphModel
  get obsolete terms in the go definition
getPage() - Method in class edu.hust.go.gui.OpenPageDialog
getPart_of() - Method in class edu.hust.go.term.DefaultGO_term
getPart_of() - Method in interface edu.hust.go.term.GO_term
getPath2Node(SimpleDirectedGraph, Object, Object) - Static method in class edu.hust.go.model.GraphPath
getPath2Root(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
getPathsBetweenNodes(GO_term, GO_term) - Method in class edu.hust.go.model.GoGraphModel
  get pathway between two Go terms
getPathsOfNode2Root(GO_term) - Method in class edu.hust.go.model.GoGraphModel
getPathway(GoGraphModel, GO_term) - Static method in class example.GraphModelExample
getPathway(GoGraphModel, GO_term, GO_term) - Static method in class example.GraphModelExample
getRelationship() - Method in class edu.hust.go.term.OboXmlGo_term
getRoots(SimpleDirectedGraph) - Static method in class edu.hust.go.model.GoGraphModel
  the roots are defined as the nodes which has no incoming edges.
getRootVertexesMap() - Method in class edu.hust.go.model.GoGraphModel
  get the roots of the whole GO graph
getSimilarity(GoGraphModel, GO_term, GO_term, byte) - Static method in class example.GraphModelExample
getStatus() - Method in class edu.hust.go.gui.OpenPageDialog
getSubset() - Method in class edu.hust.go.term.OboXmlGo_term
getSynonym() - Method in class edu.hust.go.term.OboXmlGo_term
getSynonym() - Method in class edu.hust.go.term.RdfXmlGo_term
getTargetElementName() - Method in class edu.hust.go.model.XmlGoParser
getTermMap() - Method in class edu.hust.go.model.GoParser
  get the whole GO id-terms in GO definition.
getToolTipString() - Method in class edu.hust.go.gui.GoCell
getToolTipString() - Method in class edu.hust.go.gui.GoEdge
getToolTipText(MouseEvent) - Method in class edu.hust.go.gui.GoGraphView
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.hust.go.gui.GoTreeView.TipTreeCellRenderer
getUnion_of() - Method in class edu.hust.go.term.OboXmlGo_term
getXref_analog() - Method in class edu.hust.go.term.OboXmlGo_term
getXref_unknown() - Method in class edu.hust.go.term.OboXmlGo_term
GO_term - interface edu.hust.go.term.GO_term.
GoAdaptor - class edu.hust.go.model.GoAdaptor.
GoAdaptor(GoParser, String, byte) - Constructor for class edu.hust.go.model.GoAdaptor
GoCell - class edu.hust.go.gui.GoCell.
GoCell(GO_term) - Constructor for class edu.hust.go.gui.GoCell
GoCell(Object, boolean) - Constructor for class edu.hust.go.gui.GoCell
goDefinitionType - Variable in class example.GUIExample
goDefType - Variable in class edu.hust.go.model.GoAdaptor
goDefTypeComboBox - Variable in class example.GUIExample
GoEdge - class edu.hust.go.gui.GoEdge.
GoEdge(GoCell, GoCell) - Constructor for class edu.hust.go.gui.GoEdge
GoException - exception edu.hust.go.model.GoException.
GoException(GO_term, GO_term) - Constructor for class edu.hust.go.model.GoException
GoException(String, byte) - Constructor for class edu.hust.go.model.GoException
GoGraphModel - class edu.hust.go.model.GoGraphModel.
  A graph model is constructed by the connection in GO terms.
GoGraphModel(HashMap) - Constructor for class edu.hust.go.model.GoGraphModel
GoGraphView - class edu.hust.go.gui.GoGraphView.
GoGraphView(DefaultGraphModel) - Constructor for class edu.hust.go.gui.GoGraphView
goMap - Variable in class example.GUIExample
GoParser - class edu.hust.go.model.GoParser.
GoParser(String) - Constructor for class edu.hust.go.model.GoParser
GoParser(String, int) - Constructor for class edu.hust.go.model.GoParser
GoParser(String, int, int) - Constructor for class edu.hust.go.model.GoParser
GoTreeView - class edu.hust.go.gui.GoTreeView.
GoTreeView.TipTreeCellRenderer - class edu.hust.go.gui.GoTreeView.TipTreeCellRenderer.
GoTreeView.TipTreeCellRenderer() - Constructor for class edu.hust.go.gui.GoTreeView.TipTreeCellRenderer
GoTreeView(TreeModel) - Constructor for class edu.hust.go.gui.GoTreeView
GraphCreator - class edu.hust.go.gui.GraphCreator.
  Three kinds of graphical pathways can be displayed.
GraphCreator() - Constructor for class edu.hust.go.gui.GraphCreator
GraphModelExample - class example.GraphModelExample.
GraphModelExample() - Constructor for class example.GraphModelExample
GraphPath - class edu.hust.go.model.GraphPath.
GraphPath() - Constructor for class edu.hust.go.model.GraphPath
graphView - Variable in class example.GUIExample
GUIExample - class example.GUIExample.
  Title: GO4J Description: Copyright: Copyright (c) 2005 Company:
GUIExample() - Constructor for class example.GUIExample

## H

history - Variable in class edu.hust.go.term.RdfXmlGo_term

## I

id - Variable in class edu.hust.go.term.DefaultGO_term
ignorableWhitespace(char[], int, int) - Method in class edu.hust.go.model.XmlGoParser
init() - Method in class edu.hust.go.model.XmlGoParser
inOnePathway(GO_term, GO_term) - Method in class edu.hust.go.model.GoGraphModel
  Tell whether two nodes are in one pathway
internalEntityDecl(String, String) - Method in class edu.hust.go.model.XmlGoParser
intersection_of - Variable in class edu.hust.go.term.OboXmlGo_term
is_a - Variable in class edu.hust.go.term.DefaultGO_term
is_anonymous - Variable in class edu.hust.go.term.OboXmlGo_term
is_obsolete - Variable in class edu.hust.go.term.OBOGO_term
is_obsolete - Variable in class edu.hust.go.term.OboXmlGo_term
is_obsolete - Variable in class edu.hust.go.term.RdfXmlGo_term
is_root - Variable in class edu.hust.go.term.OboXmlGo_term
isFocus() - Method in class edu.hust.go.term.RdfXmlGo_term
isIs_anonymous() - Method in class edu.hust.go.term.OboXmlGo_term
isIs_obsolete() - Method in class edu.hust.go.term.OboXmlGo_term
isIs_obsolete() - Method in class edu.hust.go.term.RdfXmlGo_term
isIs_root() - Method in class edu.hust.go.term.OboXmlGo_term

## J

JGRAPHVIEW - Static variable in class edu.hust.go.gui.GraphCreator
JTREEGRAPHVIEW - Static variable in class edu.hust.go.gui.GraphCreator
JTREEVIEW - Static variable in class edu.hust.go.gui.GraphCreator

## L

lexical_category - Variable in class edu.hust.go.term.OboXmlGo_term
LIN - Static variable in class edu.hust.go.model.Similarity
loadGoDefinition(String, byte) - Static method in class edu.hust.go.model.GoGraphModel
  Construct a map between GO id and GO terms

## M

m_ParserActive - Variable in class edu.hust.go.model.GoParser
main(String[]) - Static method in class example.GUIExample
main(String[]) - Static method in class example.GraphModelExample
main(String[]) - Static method in class example.ParserExample
map - Variable in class edu.hust.go.model.GoAdaptor
mIdTextField - Variable in class example.GUIExample
msg - Variable in class edu.hust.go.model.GoException
MyEdge - class edu.hust.go.model.MyEdge.
MyEdge(Object, Object) - Constructor for class edu.hust.go.model.MyEdge

## N

n_associations - Variable in class edu.hust.go.term.RdfXmlGo_term
name - Variable in class edu.hust.go.term.DefaultGO_term
namespace - Variable in class edu.hust.go.term.OBOGO_term
namespace - Variable in class edu.hust.go.term.OboXmlGo_term
narrow_synonym - Variable in class edu.hust.go.term.OBOGO_term
notationDecl(String, String, String) - Method in class edu.hust.go.model.XmlGoParser

## O

OBO - Static variable in class edu.hust.go.model.GoParser
oboButton - Variable in class example.GUIExample
OBOGO_term - class edu.hust.go.term.OBOGO_term.
OBOGO_term(HashMap) - Constructor for class edu.hust.go.term.OBOGO_term
OboGoParser - class edu.hust.go.model.OboGoParser.
OboGoParser(String) - Constructor for class edu.hust.go.model.OboGoParser
OboGoParser(String, int) - Constructor for class edu.hust.go.model.OboGoParser
OboGoParser(String, int, int) - Constructor for class edu.hust.go.model.OboGoParser
OBOXML - Static variable in class edu.hust.go.model.GoParser
OboXmlGo_term - class edu.hust.go.term.OboXmlGo_term.
OboXmlGo_term.Def - class edu.hust.go.term.OboXmlGo_term.Def.
OboXmlGo_term.Def(Document, CachedXPathAPI) - Constructor for class edu.hust.go.term.OboXmlGo_term.Def
OboXmlGo_term.Synonym - class edu.hust.go.term.OboXmlGo_term.Synonym.
OboXmlGo_term.Synonym(Node, CachedXPathAPI) - Constructor for class edu.hust.go.term.OboXmlGo_term.Synonym
OboXmlGo_term(Document) - Constructor for class edu.hust.go.term.OboXmlGo_term
OboXmlGoParser - class edu.hust.go.model.OboXmlGoParser.
OboXmlGoParser(String) - Constructor for class edu.hust.go.model.OboXmlGoParser
OboXmlGoParser(String, int) - Constructor for class edu.hust.go.model.OboXmlGoParser
OboXmlGoParser(String, int, int) - Constructor for class edu.hust.go.model.OboXmlGoParser
oldZZL - Static variable in class edu.hust.go.model.Similarity
OpenPageDialog - class edu.hust.go.gui.OpenPageDialog.
OpenPageDialog(Frame, boolean) - Constructor for class edu.hust.go.gui.OpenPageDialog
  Creates new form OpenPageDialog
OWL - Static variable in class edu.hust.go.model.GoParser
OwlGo_term - class edu.hust.go.term.OwlGo_term.
OwlGo_term(Document) - Constructor for class edu.hust.go.term.OwlGo_term
OwlGoParser - class edu.hust.go.model.OwlGoParser.
OwlGoParser(String) - Constructor for class edu.hust.go.model.OwlGoParser
OwlGoParser(String, int) - Constructor for class edu.hust.go.model.OwlGoParser
OwlGoParser(String, int, int) - Constructor for class edu.hust.go.model.OwlGoParser

## P

panel - Variable in class example.GUIExample
parpareMultipleGoId(String) - Method in class example.GUIExample
parse(byte) - Method in class edu.hust.go.model.GoParser
parser - Variable in class edu.hust.go.model.GoAdaptor
parser - Variable in class edu.hust.go.model.XmlGoParser
ParserExample - class example.ParserExample.
ParserExample() - Constructor for class example.ParserExample
parseTarget() - Method in class edu.hust.go.model.GoParser
parseTarget() - Method in class edu.hust.go.model.OboGoParser
parseTarget() - Method in class edu.hust.go.model.XmlGoParser
parsingInProgress() - Method in class edu.hust.go.model.GoParser
part_of - Variable in class edu.hust.go.term.DefaultGO_term
poolSize - Variable in class edu.hust.go.model.GoParser
printError(String, SAXParseException) - Method in class edu.hust.go.model.XmlGoParser
printUsage() - Static method in class example.GraphModelExample
printUsage() - Static method in class example.ParserExample
processingInstruction(String, String) - Method in class edu.hust.go.model.XmlGoParser

## Q

query(byte) - Method in class example.GUIExample
query(String[], HashMap, byte, int) - Static method in class edu.hust.go.gui.GraphCreator
  Construct GUI by GO ids
queryButton - Variable in class example.GUIExample
queueProcessed() - Method in class edu.hust.go.model.GoParser

## R

RDFXML - Static variable in class edu.hust.go.model.GoParser
RdfXmlGo_term - class edu.hust.go.term.RdfXmlGo_term.
RdfXmlGo_term(Document) - Constructor for class edu.hust.go.term.RdfXmlGo_term
RdfXmlGoParser - class edu.hust.go.model.RdfXmlGoParser.
RdfXmlGoParser(String) - Constructor for class edu.hust.go.model.RdfXmlGoParser
RdfXmlGoParser(String, int) - Constructor for class edu.hust.go.model.RdfXmlGoParser
RdfXmlGoParser(String, int, int) - Constructor for class edu.hust.go.model.RdfXmlGoParser
related_synonym - Variable in class edu.hust.go.term.OBOGO_term
related(SimpleDirectedGraph, Object, Object) - Static method in class edu.hust.go.model.GraphPath
relationship - Variable in class edu.hust.go.term.OBOGO_term
relationship - Variable in class edu.hust.go.term.OboXmlGo_term
removeThread(String) - Method in class edu.hust.go.model.GoParser
RESNIK - Static variable in class edu.hust.go.model.Similarity
run() - Method in class edu.hust.go.model.GoAdaptor

## S

scope - Variable in class edu.hust.go.term.OboXmlGo_term.Synonym
setAssociation(Document, CachedXPathAPI) - Method in class edu.hust.go.term.RdfXmlGo_term
setAttrVector(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.RdfXmlGo_term
setBool(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.OboXmlGo_term
setBool(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.RdfXmlGo_term
setBool(HashMap, String) - Method in class edu.hust.go.term.OBOGO_term
setDbxref(Document, CachedXPathAPI) - Method in class edu.hust.go.term.RdfXmlGo_term
setDbxref(Node, CachedXPathAPI) - Method in class edu.hust.go.term.RdfXmlGo_term
setDocumentLocator(Locator) - Method in class edu.hust.go.model.XmlGoParser
setFileChooser(JFileChooser) - Method in class edu.hust.go.gui.OpenPageDialog
  Sets the file chooser used by the Browse button
setHistory(Document, CachedXPathAPI) - Method in class edu.hust.go.term.RdfXmlGo_term
setIs_a(Document, CachedXPathAPI) - Method in class edu.hust.go.term.OwlGo_term
setParserActive() - Method in class edu.hust.go.model.GoParser
setParsingComplete() - Method in class edu.hust.go.model.GoParser
setPartOf(Document, CachedXPathAPI) - Method in class edu.hust.go.term.OwlGo_term
setRelationship(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.OboXmlGo_term
setStr(HashMap, String) - Method in class edu.hust.go.term.OBOGO_term
setSynonym(Document, CachedXPathAPI) - Method in class edu.hust.go.term.OboXmlGo_term
setTargetElementName(String) - Method in class edu.hust.go.model.XmlGoParser
setVector(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.OboXmlGo_term
setVector(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.RdfXmlGo_term
setVector(HashMap, String) - Method in class edu.hust.go.term.OBOGO_term
setXref(NodeList, CachedXPathAPI) - Method in class edu.hust.go.term.OboXmlGo_term
Similarity - class edu.hust.go.model.Similarity.
Similarity() - Constructor for class edu.hust.go.model.Similarity
skippedEntity(String) - Method in class edu.hust.go.model.XmlGoParser
startCDATA() - Method in class edu.hust.go.model.XmlGoParser
startDocument() - Method in class edu.hust.go.model.XmlGoParser
startDTD(String, String, String) - Method in class edu.hust.go.model.XmlGoParser
startElement(String, String, String, Attributes) - Method in class edu.hust.go.model.XmlGoParser
startEntity(String) - Method in class edu.hust.go.model.XmlGoParser
startPrefixMapping(String, String) - Method in class edu.hust.go.model.XmlGoParser
statusBar - Variable in class example.GUIExample
subset - Variable in class edu.hust.go.term.OBOGO_term
subset - Variable in class edu.hust.go.term.OboXmlGo_term
synonym - Variable in class edu.hust.go.term.OBOGO_term
synonym - Variable in class edu.hust.go.term.OboXmlGo_term
synonym - Variable in class edu.hust.go.term.RdfXmlGo_term

## T

target - Variable in class edu.hust.go.model.GoParser
targetElementName - Variable in class edu.hust.go.model.XmlGoParser
termMap - Variable in class edu.hust.go.model.GoParser
text - Variable in class edu.hust.go.term.OboXmlGo_term.Synonym
textPanel - Variable in class example.GUIExample
threadActive() - Method in class edu.hust.go.model.GoParser
threadName - Variable in class edu.hust.go.model.GoAdaptor
threadNumber - Variable in class edu.hust.go.model.GoParser
threadPool - Variable in class edu.hust.go.model.GoParser
toString() - Method in class edu.hust.go.gui.GoCell
toString() - Method in class edu.hust.go.model.GoException
toString() - Method in class edu.hust.go.term.DefaultGO_term
transform(String) - Method in class edu.hust.go.term.OwlGo_term
transForm(String[], HashMap, HashSet) - Static method in class edu.hust.go.gui.GraphCreator
  transforms standard GO ids into GO terms.
transForm(String, HashMap) - Static method in class example.GraphModelExample
treeGraphView - Variable in class example.GUIExample
treeView - Variable in class example.GUIExample

## U

union_of - Variable in class edu.hust.go.term.OboXmlGo_term
unparsedEntityDecl(String, String, String, String) - Method in class edu.hust.go.model.XmlGoParser
use_term - Variable in class edu.hust.go.term.OBOGO_term

## V

viewPanel - Variable in class example.GUIExample
viewType - Variable in class example.GUIExample
viewTypeComboBox - Variable in class example.GUIExample

## W

warning(SAXParseException) - Method in class edu.hust.go.model.XmlGoParser

## X

XmlGoParser - class edu.hust.go.model.XmlGoParser.
XmlGoParser(String) - Constructor for class edu.hust.go.model.XmlGoParser
XmlGoParser(String, int) - Constructor for class edu.hust.go.model.XmlGoParser
XmlGoParser(String, int, int) - Constructor for class edu.hust.go.model.XmlGoParser
xref_analog - Variable in class edu.hust.go.term.OBOGO_term
xref_analog - Variable in class edu.hust.go.term.OboXmlGo_term
xref_unknown - Variable in class edu.hust.go.term.OBOGO_term
xref_unknown - Variable in class edu.hust.go.term.OboXmlGo_term

## Z

ZZL - Static variable in class edu.hust.go.model.Similarity

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