edu.hust.go.term
Class OboXmlGo_term

java.lang.Object
  |
  +--edu.hust.go.term.DefaultGO_term
        |
        +--edu.hust.go.term.OboXmlGo_term

All Implemented Interfaces:

java.lang.Cloneable, GO_term

public class OboXmlGo_term

extends DefaultGO_term

Nested Class Summary

(package private) class	OboXmlGo_term.Def
(package private) class	OboXmlGo_term.Synonym

Field Summary

(package private) java.util.Vector	alt_id
(package private) java.lang.String	comment
(package private) OboXmlGo_term.Def	definition
(package private) java.util.Vector	intersection_of
(package private) boolean	is_anonymous
(package private) boolean	is_obsolete
(package private) boolean	is_root
(package private) java.lang.String	lexical_category
(package private) java.lang.String	namespace
(package private) java.util.Vector	relationship
(package private) java.util.Vector	subset
(package private) java.util.Vector	synonym
(package private) java.util.Vector	union_of
(package private) java.util.Vector	xref_analog
(package private) java.util.Vector	xref_unknown

Fields inherited from class edu.hust.go.term.DefaultGO_term

def, id, is_a, name, part_of

Constructor Summary

OboXmlGo_term(org.w3c.dom.Document doc)

Method Summary

java.util.Vector	getAlt_id()
java.lang.String	getComment()
OboXmlGo_term.Def	getDefinition()
java.util.Vector	getIntersection_of()
java.lang.String	getLexical_category()
java.lang.String	getNamespace()
java.util.Vector	getRelationship()
java.util.Vector	getSubset()
java.util.Vector	getSynonym()
java.util.Vector	getUnion_of()
java.util.Vector	getXref_analog()
java.util.Vector	getXref_unknown()
boolean	isIs_anonymous()
boolean	isIs_obsolete()
boolean	isIs_root()
(package private) boolean	setBool(org.w3c.dom.Document doc, CachedXPathAPI xpath, java.lang.String xqueryStr)
(package private) java.util.Vector	setRelationship(org.w3c.dom.Document doc, CachedXPathAPI xpath, java.lang.String xqueryStr)
(package private) java.util.Vector	setSynonym(org.w3c.dom.Document doc, CachedXPathAPI xpath)
(package private) java.util.Vector	setVector(org.w3c.dom.Document doc, CachedXPathAPI xpath, java.lang.String xqueryStr)
(package private) java.util.Vector	setXref(org.w3c.dom.NodeList nodeList, CachedXPathAPI xpath)

Methods inherited from class edu.hust.go.term.DefaultGO_term

getDef, getId, getIs_a, getName, getPart_of, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

namespace

java.lang.String namespace

definition

OboXmlGo_term.Def definition

alt_id

java.util.Vector alt_id

subset

java.util.Vector subset

comment

java.lang.String comment

is_anonymous

boolean is_anonymous

is_obsolete

boolean is_obsolete

is_root

boolean is_root

xref_analog

java.util.Vector xref_analog

xref_unknown

java.util.Vector xref_unknown

synonym

java.util.Vector synonym

relationship

java.util.Vector relationship

intersection_of

java.util.Vector intersection_of

union_of

java.util.Vector union_of

lexical_category

java.lang.String lexical_category

Constructor Detail

OboXmlGo_term

public OboXmlGo_term(org.w3c.dom.Document doc)
              throws javax.xml.transform.TransformerException

Method Detail

setVector

java.util.Vector setVector(org.w3c.dom.Document doc,
                           CachedXPathAPI xpath,
                           java.lang.String xqueryStr)
                     throws javax.xml.transform.TransformerException

javax.xml.transform.TransformerException

setBool

boolean setBool(org.w3c.dom.Document doc,
                CachedXPathAPI xpath,
                java.lang.String xqueryStr)
          throws javax.xml.transform.TransformerException

javax.xml.transform.TransformerException

setXref

java.util.Vector setXref(org.w3c.dom.NodeList nodeList,
                         CachedXPathAPI xpath)
                   throws javax.xml.transform.TransformerException

javax.xml.transform.TransformerException

setSynonym

java.util.Vector setSynonym(org.w3c.dom.Document doc,
                            CachedXPathAPI xpath)
                      throws javax.xml.transform.TransformerException

javax.xml.transform.TransformerException

setRelationship

java.util.Vector setRelationship(org.w3c.dom.Document doc,
                                 CachedXPathAPI xpath,
                                 java.lang.String xqueryStr)
                           throws javax.xml.transform.TransformerException

javax.xml.transform.TransformerException

getAlt_id

public java.util.Vector getAlt_id()

getComment

public java.lang.String getComment()

getDefinition

public OboXmlGo_term.Def getDefinition()

getIntersection_of

public java.util.Vector getIntersection_of()

isIs_anonymous

public boolean isIs_anonymous()

isIs_obsolete

public boolean isIs_obsolete()

isIs_root

public boolean isIs_root()

getLexical_category

public java.lang.String getLexical_category()

getRelationship

public java.util.Vector getRelationship()

getNamespace

public java.lang.String getNamespace()

getSubset

public java.util.Vector getSubset()

getSynonym

public java.util.Vector getSynonym()

getUnion_of

public java.util.Vector getUnion_of()

getXref_analog

public java.util.Vector getXref_analog()

getXref_unknown

public java.util.Vector getXref_unknown()