org.metaqtl.factory
Class MetaMapSummaryFactory

java.lang.Object
  org.metaqtl.factory.MetaMapSummaryFactory

public class MetaMapSummaryFactory
extends java.lang.Object

A factory to write out the information on a MetaMap.

Constructor Summary

MetaMapSummaryFactory()

Method Summary

static void

write(MetaMap metaMap, java.io.OutputStream stream) This methods writes out the summary for a consensus genetic map into a given output stream stream.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MetaMapSummaryFactory

public MetaMapSummaryFactory()

Method Detail

write

public static void write(MetaMap metaMap,
                         java.io.OutputStream stream)
                  throws java.io.IOException

This methods writes out the summary for a consensus genetic map into a given output stream stream. The user is reponsible for closing the stream. The format of the output is as follows :

• CH the name of the chromosome.
• NM the number of markers on the chromosome.
• GF the goodness-of-fit.
• PV the p-value.
• DF the degress of freedom.
• SR the standard residuals for the marker intervals of the imput maps.

Parameters:

metaMap - a consensus genetic map.

stream - an output stream.

Throws:

java.io.IOException