org.metaqtl.factory
Class MetaQtlAnalysisSummaryFactory

java.lang.Object
  org.metaqtl.factory.MetaQtlAnalysisSummaryFactory

public class MetaQtlAnalysisSummaryFactory
extends java.lang.Object

A factory to deal with QTL meta-analysis result.

Constructor Summary

MetaQtlAnalysisSummaryFactory()

Method Summary

static void

write(MetaQtlAnalysis analysis, java.io.OutputStream stream) This method writes out the summary for a givene QTL meta-analysis result analysis on the given output stream stream.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MetaQtlAnalysisSummaryFactory

public MetaQtlAnalysisSummaryFactory()

Method Detail

write

public static void write(MetaQtlAnalysis analysis,
                         java.io.OutputStream stream)
                  throws java.io.IOException

This method writes out the summary for a givene QTL meta-analysis result analysis on the given output stream stream. The user is respondible for closing the stream. The output is a tabulated format with the following columns :

• Chromosome : the name of the chromosome.
• Trait : the name of the trait or trait group.
• K : the number of cluster.
• Log : the log-likelihood of the clustering model.
• CLog : the complete log-likelihood of the clustering model.
• AIC : the Akaike criterion.
• AIC3 : the modified Akaike criteria.
• ICOMP : the Information Complexity criterion.
• BIC : the Bayesian Information criterion.
• AWE : the Average of Weighted Evidence criterion.

Parameters:

analysis -

stream -

Throws:

java.io.IOException