Package org.metaqtl.main

Class Summary

A2Xml
CmdLineParser	Largely GNU-compatible command-line options parser.
CmdLineParser.Option	Representation of a command-line option
CmdLineParser.Option.BooleanOption
CmdLineParser.Option.DoubleOption	An option that expects a floating-point value
CmdLineParser.Option.IntegerOption	An option that expects an integer value
CmdLineParser.Option.LongOption	An option that expects a long integer value
CmdLineParser.Option.StringOption	An option that expects a string value
ConsMap
InfoMap
MapView
MetaDB
MetaMain
MMapView
MQTLView
QTLClust
QTLClustInfo
QTLModel
QTLProj
QTLTree
Xml2A

Exception Summary

CmdLineParser.IllegalOptionValueException	Thrown when an illegal or missing value is given by the user for an option that takes a value.
CmdLineParser.NotFlagException	Thrown when the parsed commandline contains multiple concatenated short options, such as -abcd, where one or more requires a value.
CmdLineParser.OptionException	Base class for exceptions that may be thrown when options are parsed
CmdLineParser.UnknownOptionException	Thrown when the parsed command-line contains an option that is not recognised.
CmdLineParser.UnknownSuboptionException	Thrown when the parsed commandline contains multiple concatenated short options, such as -abcd, where one is unknown.