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| Packages that use IBioOntology | |
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| org.metaqtl | |
| org.metaqtl.algo | |
| org.metaqtl.main | |
| org.thalia.bio.entity | |
| Uses of IBioOntology in org.metaqtl |
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| Methods in org.metaqtl with parameters of type IBioOntology | |
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void |
MetaQtlData.doTraitOntologyClustering(IBioOntology ontology)
According to the given trait ontology this methods clusterize the QTL in group in such a way that each group represents a trait term in the ontology. |
| Uses of IBioOntology in org.metaqtl.algo |
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| Fields in org.metaqtl.algo declared as IBioOntology | |
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protected IBioOntology |
ClustAlgorithm.ontology
The optional trait ontology to use to group Qtl. |
| Constructors in org.metaqtl.algo with parameters of type IBioOntology | |
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ClustAlgorithm(IBioGenome map,
IBioOntology ontology)
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ClustAlgorithm(IBioGenome map,
java.lang.String name,
IBioOntology ontology)
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QtlClustAlgorithm(IBioGenome map,
IBioOntology ontology)
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QtlClustAlgorithm(IBioGenome map,
java.lang.String chrom,
IBioOntology ontology)
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QtlTreeAlgorithm(IBioGenome map,
IBioOntology ontology)
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| Uses of IBioOntology in org.metaqtl.main |
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| Methods in org.metaqtl.main that return IBioOntology | |
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protected static IBioOntology |
MetaMain.getOntology(java.lang.String ontoF,
char format)
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| Methods in org.metaqtl.main with parameters of type IBioOntology | |
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static ChromGraph[] |
MetaMain.getChromGraph(Chromosome[] chroms,
boolean withQtl,
int modeQtl,
IBioOntology ontology,
MetaQtlAnalysis treeAnalysis)
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static QtlPartition |
MetaMain.getQtlPartition(Chromosome chromosome,
IBioOntology ontology)
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| Uses of IBioOntology in org.thalia.bio.entity |
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| Classes in org.thalia.bio.entity that implement IBioOntology | |
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class |
Ontology
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