org.thalia.bio.entity
Class Marker

java.lang.Object
  org.thalia.bio.entity.BioEntity
      org.thalia.bio.entity.BioEntityContainer
          org.thalia.bio.entity.AlleleContainer
              org.thalia.bio.entity.Locus
                  org.thalia.bio.entity.Marker

All Implemented Interfaces:

IBioAdaptable, IBioEntity, IBioLocus

public class Marker
extends Locus
implements IBioLocus

Class Description Here

Author:

Jean-Baptiste Veyrieras

Field Summary

Fields inherited from class org.thalia.bio.entity.Locus

position

Fields inherited from class org.thalia.bio.entity.BioEntityContainer

entities

Fields inherited from class org.thalia.bio.entity.BioEntity

name, parent, properties

Fields inherited from interface org.thalia.bio.IBioLocus

MARKER, QTL, TypesString

Constructor Summary

Marker()

Marker(java.lang.String name, IBioEntity parent)

Method Summary

IBioAdapter	getBioAdapter()
int	getLocusType()
int	getType() There are 2 main class of entities.

Methods inherited from class org.thalia.bio.entity.Locus

getGroup, getLocusAdapter, getPosition, newLocus, newLocus, setGroup, setPosition, setPosition, setPosition

Methods inherited from class org.thalia.bio.entity.AlleleContainer

addAllele, alleles, getAllele, getAlleleNumber, removeAllele

Methods inherited from class org.thalia.bio.entity.BioEntityContainer

addEntity, entities, entityNumber, getEntity, removeEntity

Methods inherited from class org.thalia.bio.entity.BioEntity

getName, getParent, getProperties, newBioEntity, setName, setProperties

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.thalia.bio.IBioLocus

addAllele, alleles, getAllele, getAlleleNumber, getGroup, getPosition, removeAllele, setGroup, setPosition, setPosition, setPosition

Methods inherited from interface org.thalia.bio.IBioEntity

getName, getParent, getProperties, setName, setProperties

Constructor Detail

Marker

public Marker()

Marker

public Marker(java.lang.String name,
              IBioEntity parent)

Parameters:

name -

parent -

Method Detail

getType

public int getType()

Description copied from interface: IBioEntity

There are 2 main class of entities. The first one deals with population biological entity, i.e population itself and individuals. The second class is a representation of microscopic biological entity from genome container to alleles.

Specified by:

getType in interface IBioEntity

Specified by:

getType in interface IBioLocus

Specified by:

getType in class AlleleContainer

getBioAdapter

public IBioAdapter getBioAdapter()

Specified by:

getBioAdapter in interface IBioAdaptable

getLocusType

public int getLocusType()

Specified by:

getLocusType in interface IBioLocus