ribl "dontot_111772"
* Ri 2.54
*
* Ri(b,l) table is from:
** rseq 5.38 rsequence calculated from encoded sequences from:
** encode 1.36; encoding of sequences in
** * 1902/01/22 15:08:27, 1902/01/22 13:19:26, donor
*
* BOOK/INST sequences are from:
* 1902/01/22 15:08:27, 1902/01/22 13:19:26, donor
* title "donor";
*
* PARAMETERS FOR Ri:
* -3 6 From-To
* 6 column of value file
* -2147483647.000000 2147483647.000000 lowest to highest Ri selected
* -2147483647.000000 2147483647.000000 lowest to highest Value selected
* not printing sequences to sequ
*     printing sequences to rixyin
* -: whole line printed when partial site
*  using Staden's Method: when f(b,l) = 0, replace with f(b,l) = 1/(n+t), t = 2
* 
* i alignmenttype first, book, instructions
*      Ri(a,l)      Ri(c,l)      Ri(g,l)      Ri(t,l)        l        a        c        g        t
      -3        6 frombase, tobase
      0.291803     0.392208    -0.581031    -1.208800       -3    37614    40325    20540    13293
      1.232712    -1.395797    -1.291090    -1.003109       -2    72209    11677    12556    15330
     -1.457257    -3.358357     1.552396    -2.041253       -1    11190     2996    90121     7465
    -16.770225   -16.770225     1.863020   -16.770225        0        0        0   111772        0
    -16.770225    -5.180961   -16.770225     1.852046        1        0      847        0   110925
      1.123186    -3.390987     0.341378    -3.364147        2    66930     2929    38929     2984
      1.346557    -1.912296    -1.261296    -1.279987        3    78138     8163    12818    12653
     -1.665643    -2.356433     1.512419    -1.866034        4     9685     6000    87658     8429
     -0.629965    -0.907091    -0.515264     0.814401        5    19855    16385    21498    54034
      0.103873    -0.508035     0.103261    -0.348041        6    33020    21606    33006    24140
*
    6.735376 bits = mean (Rsequence of selected region)
    2.344261 bits = standard deviation
*
   11.792818 bits = Ri of consensus sequence from -3 to -3
  -48.578246 bits = Ri of anticonsensus sequence from -3 to -3
*
  -27.211185 bits = average Ri for random sequence from -3 to -3
*
    111772 n, number of sequences used to create the matrix
*
asymmetric symmetry of the matrix
*
-5000.000000 Ri bound: lower bound on Ri
  100.000000 Z bound: lower bound on Z
    1.000000 P bound: upper probability
*
.

