CC ?= gcc
CFLAGS = `pkg-config --cflags gtk+-3.0`  -Wall -g -O3
LIBS = `pkg-config --libs gtk+-3.0`

SRC = main.c main_win.c load_reference_file.c load_fastq_file.c load_sam_file.c analyse_walking_win_choose.c analyse_walking_win_result.c analyse_sam_win_choose.c analyse_sam_win_result.c analyse_walking_win_pairend_result.c

OBJS = $(SRC:.c=.o)

MAIN = run

all: $(MAIN)
	@echo compile successful

%.o: %.c
	$(CC) -c -o $(@F) $(CFLAGS) $<

$(MAIN): $(OBJS)
	$(CC) -o $(@F) $(OBJS) $(LIBS)

clean:
	rm -f $(OBJS)








