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  • BioCocoa: Biolibrary for Obj-C - Downloads

    biococoa 2.1.0 (tgz)

    Release notes:

    BioCocoa 2.1.0 -- (found in Tags / 2.1.0)
    
    - New BCSuffixArray and BCMCP classes for constructing disk-based suffix arrays of sequences and finding the maximum common prefixes of sequences using those suffix arrays.  This is work based upon the following publication:
    
    	Scott Christley, Neil F. Lobo and Greg Madey.
    	Multiple Organism Algorithm for Finding Ultraconserved Elements.
    	BMC Bioinformatics, 9: 15, 2008.
    
    - New BCCachedSequenceFile and BCCachedFastaFile classes that allow for reading sequence data without reading the whole sequence into memory.  This is useful for working with very large sequences like whole genomes.  A future release will support a BCCachedSequence which provides a consistent sequence interface regardless of whether the sequence is in memory or cached on disk.
    - File format can be explictly provided to BCSequenceReader using BCFileFormat.
    - Documentation updates.
    - More complete port to GNUstep, all BCFoundation functionality should be available.
    - Quad-fat binary supporting 32/64-bit and ppc/intel processors.
    
    


    Changelog:

     

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