A B C D E F G H I J L M N O P Q R S T U V W X Z

A

actionPerformed(ActionEvent) - Method in class example.GUIExample
 
addDataToPool(Object) - Method in class edu.hust.go.model.GoParser
 
addPort() - Method in class edu.hust.go.gui.GoCell
 
addTermToMap(Object, byte) - Method in class edu.hust.go.model.GoParser
 
alt_id - Variable in class edu.hust.go.term.OBOGO_term
 
alt_id - Variable in class edu.hust.go.term.OboXmlGo_term
 
APPROVE_OPTION - Static variable in class edu.hust.go.gui.OpenPageDialog
 
association - Variable in class edu.hust.go.term.RdfXmlGo_term
 
attributeDecl(String, String, String, String, String) - Method in class edu.hust.go.model.XmlGoParser
 

B

broad_synonym - Variable in class edu.hust.go.term.OBOGO_term
 
buildSubGraph(ArrayList, int, int) - Method in class edu.hust.go.model.GoGraphModel
extract sub graph from GO graph, the sub graph contains a set of target go terms , and related in the pathway from the root to its leaf nodes, for example, one pathway is A->B->C->Target->D->E->F, while A is root and F is leaf, and suppose parentLevel and childLevel are both 1, then the nodes C, Taraget, and D are extracted intio the subGraph, the the related edges are extracted into the subGraph too.

C

CANCEL_OPTION - Static variable in class edu.hust.go.gui.OpenPageDialog
 
CAO - Static variable in class edu.hust.go.model.Similarity
 
characters(char[], int, int) - Method in class edu.hust.go.model.XmlGoParser
 
childLevleComboBox - Variable in class example.GUIExample
 
chindLevel - Variable in class example.GUIExample
 
clone() - Method in class edu.hust.go.gui.GoCell
 
comment - Variable in class edu.hust.go.term.OBOGO_term
 
comment - Variable in class edu.hust.go.term.OboXmlGo_term
 
comment - Variable in class edu.hust.go.term.RdfXmlGo_term
 
comment(char[], int, int) - Method in class edu.hust.go.model.XmlGoParser
 
createView(GoGraphModel, ArrayList, byte, int, int) - Static method in class edu.hust.go.gui.GraphCreator
Construct GUI by GO terms
curDocument - Variable in class edu.hust.go.model.XmlGoParser
 
curElement - Variable in class edu.hust.go.model.XmlGoParser
 

D

dataPool - Variable in class edu.hust.go.model.GoParser
 
dbxref - Variable in class edu.hust.go.term.OboXmlGo_term.Def
 
dbxref - Variable in class edu.hust.go.term.OboXmlGo_term.Synonym
 
dbxref - Variable in class edu.hust.go.term.RdfXmlGo_term
 
def - Variable in class edu.hust.go.term.DefaultGO_term
 
DefaultGO_term - class edu.hust.go.term.DefaultGO_term.
 
DefaultGO_term() - Constructor for class edu.hust.go.term.DefaultGO_term
 
defaultPoolSize - Static variable in class edu.hust.go.model.GoParser
 
defaultThreadNumber - Static variable in class edu.hust.go.model.GoParser
 
definition - Variable in class edu.hust.go.term.OboXmlGo_term
 
defStr - Variable in class edu.hust.go.term.OboXmlGo_term.Def
 

E

edu.hust.go.gui - package edu.hust.go.gui
 
edu.hust.go.model - package edu.hust.go.model
 
edu.hust.go.term - package edu.hust.go.term
 
elementDecl(String, String) - Method in class edu.hust.go.model.XmlGoParser
 
endCDATA() - Method in class edu.hust.go.model.XmlGoParser
 
endDocument() - Method in class edu.hust.go.model.XmlGoParser
 
endDTD() - Method in class edu.hust.go.model.XmlGoParser
 
endElement(String, String, String) - Method in class edu.hust.go.model.XmlGoParser
 
endEntity(String) - Method in class edu.hust.go.model.XmlGoParser
 
endPrefixMapping(String) - Method in class edu.hust.go.model.XmlGoParser
 
error(SAXParseException) - Method in class edu.hust.go.model.XmlGoParser
 
evalSimilarity(GO_term, GO_term) - Method in class edu.hust.go.model.GoGraphModel
 
evalSimilarity(GO_term, GO_term, byte) - Method in class edu.hust.go.model.GoGraphModel
evaluate the similarity of two nodes in directed acylic graph
evaluate(GoGraphModel, Object, Object, byte) - Static method in class edu.hust.go.model.Similarity
evaluate the similarity of two nodes in directed acylic graph
exact_synonym - Variable in class edu.hust.go.term.OBOGO_term
 
example - package example
 
externalEntityDecl(String, String, String) - Method in class edu.hust.go.model.XmlGoParser
 

F

fatalError(SAXParseException) - Method in class edu.hust.go.model.XmlGoParser
 
focus - Variable in class edu.hust.go.term.RdfXmlGo_term
 

G

getAlt_id() - Method in class edu.hust.go.term.OboXmlGo_term
 
getAssociation() - Method in class edu.hust.go.term.RdfXmlGo_term
 
getComment() - Method in class edu.hust.go.term.OboXmlGo_term
 
getComment() - Method in class edu.hust.go.term.RdfXmlGo_term
 
getCommonElements(Object[][], HashMap) - Static method in class edu.hust.go.model.GraphPath
 
getCommonElements(Object[], Object[]) - Static method in class edu.hust.go.model.GraphPath
 
getCommonParents(ArrayList) - Method in class edu.hust.go.model.GoGraphModel
get the common parents in the pathway of target go terms.
getDataFromPool() - Method in class edu.hust.go.model.GoParser
 
getDbxref() - Method in class edu.hust.go.term.RdfXmlGo_term
 
getDef() - Method in class edu.hust.go.term.DefaultGO_term
 
getDef() - Method in interface edu.hust.go.term.GO_term
 
getDefinition() - Method in class edu.hust.go.term.OboXmlGo_term
 
getGoTermById(String) - Method in class edu.hust.go.model.GoParser
 
getGoTermById(String) - Method in class edu.hust.go.model.OboGoParser
 
getGoTermById(String) - Method in class edu.hust.go.model.OboXmlGoParser
 
getGoTermById(String) - Method in class edu.hust.go.model.OwlGoParser
 
getGoTermById(String) - Method in class edu.hust.go.model.RdfXmlGoParser
 
getGraph() - Method in class edu.hust.go.model.GoGraphModel
get the whole GO graph
getHistory() - Method in class edu.hust.go.term.RdfXmlGo_term
 
getId() - Method in class edu.hust.go.term.DefaultGO_term
 
getId() - Method in interface edu.hust.go.term.GO_term
 
getIntersection_of() - Method in class edu.hust.go.term.OboXmlGo_term
 
getIs_a() - Method in class edu.hust.go.term.DefaultGO_term
 
getIs_a() - Method in interface edu.hust.go.term.GO_term
 
getLeave(SimpleDirectedGraph) - Static method in class edu.hust.go.model.GoGraphModel
the leave are defindes as the nodes which has no outgoing edges.
getLexical_category() - Method in class edu.hust.go.term.OboXmlGo_term
 
getN_associations() - Method in class edu.hust.go.term.RdfXmlGo_term
 
getName() - Method in class edu.hust.go.term.DefaultGO_term
 
getName() - Method in interface edu.hust.go.term.GO_term
 
getNamespace() - Method in class edu.hust.go.term.OboXmlGo_term
 
getNodeAllChildren(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
 
getNodeAllParents(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
 
getNodeChildren(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
 
getNodeParents(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
 
getObsoleteSet() - Method in class edu.hust.go.model.GoGraphModel
get obsolete terms in the go definition
getPage() - Method in class edu.hust.go.gui.OpenPageDialog
 
getPart_of() - Method in class edu.hust.go.term.DefaultGO_term
 
getPart_of() - Method in interface edu.hust.go.term.GO_term
 
getPath2Node(SimpleDirectedGraph, Object, Object) - Static method in class edu.hust.go.model.GraphPath
 
getPath2Root(SimpleDirectedGraph, Object) - Static method in class edu.hust.go.model.GraphPath
 
getPathsBetweenNodes(GO_term, GO_term) - Method in class edu.hust.go.model.GoGraphModel
get pathway between two Go terms
getPathsOfNode2Root(GO_term) - Method in class edu.hust.go.model.GoGraphModel
 
getPathway(GoGraphModel, GO_term) - Static method in class example.GraphModelExample
 
getPathway(GoGraphModel, GO_term, GO_term) - Static method in class example.GraphModelExample
 
getRelationship() - Method in class edu.hust.go.term.OboXmlGo_term
 
getRoots(SimpleDirectedGraph) - Static method in class edu.hust.go.model.GoGraphModel
the roots are defined as the nodes which has no incoming edges.
getRootVertexesMap() - Method in class edu.hust.go.model.GoGraphModel
get the roots of the whole GO graph
getSimilarity(GoGraphModel, GO_term, GO_term, byte) - Static method in class example.GraphModelExample
 
getStatus() - Method in class edu.hust.go.gui.OpenPageDialog
 
getSubset() - Method in class edu.hust.go.term.OboXmlGo_term
 
getSynonym() - Method in class edu.hust.go.term.OboXmlGo_term
 
getSynonym() - Method in class edu.hust.go.term.RdfXmlGo_term
 
getTargetElementName() - Method in class edu.hust.go.model.XmlGoParser
 
getTermMap() - Method in class edu.hust.go.model.GoParser
get the whole GO id-terms in GO definition.
getToolTipString() - Method in class edu.hust.go.gui.GoCell
 
getToolTipString() - Method in class edu.hust.go.gui.GoEdge
 
getToolTipText(MouseEvent) - Method in class edu.hust.go.gui.GoGraphView
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.hust.go.gui.GoTreeView.TipTreeCellRenderer
 
getUnion_of() - Method in class edu.hust.go.term.OboXmlGo_term
 
getXref_analog() - Method in class edu.hust.go.term.OboXmlGo_term
 
getXref_unknown() - Method in class edu.hust.go.term.OboXmlGo_term
 
GO_term - interface edu.hust.go.term.GO_term.
 
GoAdaptor - class edu.hust.go.model.GoAdaptor.
 
GoAdaptor(GoParser, String, byte) - Constructor for class edu.hust.go.model.GoAdaptor
 
GoCell - class edu.hust.go.gui.GoCell.
 
GoCell(GO_term) - Constructor for class edu.hust.go.gui.GoCell
 
GoCell(Object, boolean) - Constructor for class edu.hust.go.gui.GoCell
 
goDefinitionType - Variable in class example.GUIExample
 
goDefType - Variable in class edu.hust.go.model.GoAdaptor
 
goDefTypeComboBox - Variable in class example.GUIExample
 
GoEdge - class edu.hust.go.gui.GoEdge.
 
GoEdge(GoCell, GoCell) - Constructor for class edu.hust.go.gui.GoEdge
 
GoException - exception edu.hust.go.model.GoException.
 
GoException(GO_term, GO_term) - Constructor for class edu.hust.go.model.GoException
 
GoException(String, byte) - Constructor for class edu.hust.go.model.GoException
 
GoGraphModel - class edu.hust.go.model.GoGraphModel.
A graph model is constructed by the connection in GO terms.
GoGraphModel(HashMap) - Constructor for class edu.hust.go.model.GoGraphModel
 
GoGraphView - class edu.hust.go.gui.GoGraphView.
 
GoGraphView(DefaultGraphModel) - Constructor for class edu.hust.go.gui.GoGraphView
 
goMap - Variable in class example.GUIExample
 
GoParser - class edu.hust.go.model.GoParser.
 
GoParser(String) - Constructor for class edu.hust.go.model.GoParser
 
GoParser(String, int) - Constructor for class edu.hust.go.model.GoParser
 
GoParser(String, int, int) - Constructor for class edu.hust.go.model.GoParser
 
GoTreeView - class edu.hust.go.gui.GoTreeView.
 
GoTreeView.TipTreeCellRenderer - class edu.hust.go.gui.GoTreeView.TipTreeCellRenderer.
 
GoTreeView.TipTreeCellRenderer() - Constructor for class edu.hust.go.gui.GoTreeView.TipTreeCellRenderer
 
GoTreeView(TreeModel) - Constructor for class edu.hust.go.gui.GoTreeView
 
GraphCreator - class edu.hust.go.gui.GraphCreator.
Three kinds of graphical pathways can be displayed.
GraphCreator() - Constructor for class edu.hust.go.gui.GraphCreator
 
GraphModelExample - class example.GraphModelExample.
 
GraphModelExample() - Constructor for class example.GraphModelExample
 
GraphPath - class edu.hust.go.model.GraphPath.
 
GraphPath() - Constructor for class edu.hust.go.model.GraphPath
 
graphView - Variable in class example.GUIExample
 
GUIExample - class example.GUIExample.
Title: GO4J Description: Copyright: Copyright (c) 2005 Company:
GUIExample() - Constructor for class example.GUIExample
 

H

history - Variable in class edu.hust.go.term.RdfXmlGo_term
 

I

id - Variable in class edu.hust.go.term.DefaultGO_term
 
ignorableWhitespace(char[], int, int) - Method in class edu.hust.go.model.XmlGoParser
 
init() - Method in class edu.hust.go.model.XmlGoParser
 
inOnePathway(GO_term, GO_term) - Method in class edu.hust.go.model.GoGraphModel
Tell whether two nodes are in one pathway
internalEntityDecl(String, String) - Method in class edu.hust.go.model.XmlGoParser
 
intersection_of - Variable in class edu.hust.go.term.OboXmlGo_term
 
is_a - Variable in class edu.hust.go.term.DefaultGO_term
 
is_anonymous - Variable in class edu.hust.go.term.OboXmlGo_term
 
is_obsolete - Variable in class edu.hust.go.term.OBOGO_term
 
is_obsolete - Variable in class edu.hust.go.term.OboXmlGo_term
 
is_obsolete - Variable in class edu.hust.go.term.RdfXmlGo_term
 
is_root - Variable in class edu.hust.go.term.OboXmlGo_term
 
isFocus() - Method in class edu.hust.go.term.RdfXmlGo_term
 
isIs_anonymous() - Method in class edu.hust.go.term.OboXmlGo_term
 
isIs_obsolete() - Method in class edu.hust.go.term.OboXmlGo_term
 
isIs_obsolete() - Method in class edu.hust.go.term.RdfXmlGo_term
 
isIs_root() - Method in class edu.hust.go.term.OboXmlGo_term
 

J

JGRAPHVIEW - Static variable in class edu.hust.go.gui.GraphCreator
 
JTREEGRAPHVIEW - Static variable in class edu.hust.go.gui.GraphCreator
 
JTREEVIEW - Static variable in class edu.hust.go.gui.GraphCreator
 

L

lexical_category - Variable in class edu.hust.go.term.OboXmlGo_term
 
LIN - Static variable in class edu.hust.go.model.Similarity
 
loadGoDefinition(String, byte) - Static method in class edu.hust.go.model.GoGraphModel
Construct a map between GO id and GO terms

M

m_ParserActive - Variable in class edu.hust.go.model.GoParser
 
main(String[]) - Static method in class example.GUIExample
 
main(String[]) - Static method in class example.GraphModelExample
 
main(String[]) - Static method in class example.ParserExample
 
map - Variable in class edu.hust.go.model.GoAdaptor
 
mIdTextField - Variable in class example.GUIExample
 
msg - Variable in class edu.hust.go.model.GoException
 
MyEdge - class edu.hust.go.model.MyEdge.
 
MyEdge(Object, Object) - Constructor for class edu.hust.go.model.MyEdge
 

N

n_associations - Variable in class edu.hust.go.term.RdfXmlGo_term
 
name - Variable in class edu.hust.go.term.DefaultGO_term
 
namespace - Variable in class edu.hust.go.term.OBOGO_term
 
namespace - Variable in class edu.hust.go.term.OboXmlGo_term
 
narrow_synonym - Variable in class edu.hust.go.term.OBOGO_term
 
notationDecl(String, String, String) - Method in class edu.hust.go.model.XmlGoParser
 

O

OBO - Static variable in class edu.hust.go.model.GoParser
 
oboButton - Variable in class example.GUIExample
 
OBOGO_term - class edu.hust.go.term.OBOGO_term.
 
OBOGO_term(HashMap) - Constructor for class edu.hust.go.term.OBOGO_term
 
OboGoParser - class edu.hust.go.model.OboGoParser.
 
OboGoParser(String) - Constructor for class edu.hust.go.model.OboGoParser
 
OboGoParser(String, int) - Constructor for class edu.hust.go.model.OboGoParser
 
OboGoParser(String, int, int) - Constructor for class edu.hust.go.model.OboGoParser
 
OBOXML - Static variable in class edu.hust.go.model.GoParser
 
OboXmlGo_term - class edu.hust.go.term.OboXmlGo_term.
 
OboXmlGo_term.Def - class edu.hust.go.term.OboXmlGo_term.Def.
 
OboXmlGo_term.Def(Document, CachedXPathAPI) - Constructor for class edu.hust.go.term.OboXmlGo_term.Def
 
OboXmlGo_term.Synonym - class edu.hust.go.term.OboXmlGo_term.Synonym.
 
OboXmlGo_term.Synonym(Node, CachedXPathAPI) - Constructor for class edu.hust.go.term.OboXmlGo_term.Synonym
 
OboXmlGo_term(Document) - Constructor for class edu.hust.go.term.OboXmlGo_term
 
OboXmlGoParser - class edu.hust.go.model.OboXmlGoParser.
 
OboXmlGoParser(String) - Constructor for class edu.hust.go.model.OboXmlGoParser
 
OboXmlGoParser(String, int) - Constructor for class edu.hust.go.model.OboXmlGoParser
 
OboXmlGoParser(String, int, int) - Constructor for class edu.hust.go.model.OboXmlGoParser
 
oldZZL - Static variable in class edu.hust.go.model.Similarity
 
OpenPageDialog - class edu.hust.go.gui.OpenPageDialog.
 
OpenPageDialog(Frame, boolean) - Constructor for class edu.hust.go.gui.OpenPageDialog
Creates new form OpenPageDialog
OWL - Static variable in class edu.hust.go.model.GoParser
 
OwlGo_term - class edu.hust.go.term.OwlGo_term.
 
OwlGo_term(Document) - Constructor for class edu.hust.go.term.OwlGo_term
 
OwlGoParser - class edu.hust.go.model.OwlGoParser.
 
OwlGoParser(String) - Constructor for class edu.hust.go.model.OwlGoParser
 
OwlGoParser(String, int) - Constructor for class edu.hust.go.model.OwlGoParser
 
OwlGoParser(String, int, int) - Constructor for class edu.hust.go.model.OwlGoParser
 

P

panel - Variable in class example.GUIExample
 
parpareMultipleGoId(String) - Method in class example.GUIExample
 
parse(byte) - Method in class edu.hust.go.model.GoParser
 
parser - Variable in class edu.hust.go.model.GoAdaptor
 
parser - Variable in class edu.hust.go.model.XmlGoParser
 
ParserExample - class example.ParserExample.
 
ParserExample() - Constructor for class example.ParserExample
 
parseTarget() - Method in class edu.hust.go.model.GoParser
 
parseTarget() - Method in class edu.hust.go.model.OboGoParser
 
parseTarget() - Method in class edu.hust.go.model.XmlGoParser
 
parsingInProgress() - Method in class edu.hust.go.model.GoParser
 
part_of - Variable in class edu.hust.go.term.DefaultGO_term
 
poolSize - Variable in class edu.hust.go.model.GoParser
 
printError(String, SAXParseException) - Method in class edu.hust.go.model.XmlGoParser
 
printUsage() - Static method in class example.GraphModelExample
 
printUsage() - Static method in class example.ParserExample
 
processingInstruction(String, String) - Method in class edu.hust.go.model.XmlGoParser
 

Q

query(byte) - Method in class example.GUIExample
 
query(String[], HashMap, byte, int) - Static method in class edu.hust.go.gui.GraphCreator
Construct GUI by GO ids
queryButton - Variable in class example.GUIExample
 
queueProcessed() - Method in class edu.hust.go.model.GoParser
 

R

RDFXML - Static variable in class edu.hust.go.model.GoParser
 
RdfXmlGo_term - class edu.hust.go.term.RdfXmlGo_term.
 
RdfXmlGo_term(Document) - Constructor for class edu.hust.go.term.RdfXmlGo_term
 
RdfXmlGoParser - class edu.hust.go.model.RdfXmlGoParser.
 
RdfXmlGoParser(String) - Constructor for class edu.hust.go.model.RdfXmlGoParser
 
RdfXmlGoParser(String, int) - Constructor for class edu.hust.go.model.RdfXmlGoParser
 
RdfXmlGoParser(String, int, int) - Constructor for class edu.hust.go.model.RdfXmlGoParser
 
related_synonym - Variable in class edu.hust.go.term.OBOGO_term
 
related(SimpleDirectedGraph, Object, Object) - Static method in class edu.hust.go.model.GraphPath
 
relationship - Variable in class edu.hust.go.term.OBOGO_term
 
relationship - Variable in class edu.hust.go.term.OboXmlGo_term
 
removeThread(String) - Method in class edu.hust.go.model.GoParser
 
RESNIK - Static variable in class edu.hust.go.model.Similarity
 
run() - Method in class edu.hust.go.model.GoAdaptor
 

S

scope - Variable in class edu.hust.go.term.OboXmlGo_term.Synonym
 
setAssociation(Document, CachedXPathAPI) - Method in class edu.hust.go.term.RdfXmlGo_term
 
setAttrVector(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.RdfXmlGo_term
 
setBool(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.OboXmlGo_term
 
setBool(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.RdfXmlGo_term
 
setBool(HashMap, String) - Method in class edu.hust.go.term.OBOGO_term
 
setDbxref(Document, CachedXPathAPI) - Method in class edu.hust.go.term.RdfXmlGo_term
 
setDbxref(Node, CachedXPathAPI) - Method in class edu.hust.go.term.RdfXmlGo_term
 
setDocumentLocator(Locator) - Method in class edu.hust.go.model.XmlGoParser
 
setFileChooser(JFileChooser) - Method in class edu.hust.go.gui.OpenPageDialog
Sets the file chooser used by the Browse button
setHistory(Document, CachedXPathAPI) - Method in class edu.hust.go.term.RdfXmlGo_term
 
setIs_a(Document, CachedXPathAPI) - Method in class edu.hust.go.term.OwlGo_term
 
setParserActive() - Method in class edu.hust.go.model.GoParser
 
setParsingComplete() - Method in class edu.hust.go.model.GoParser
 
setPartOf(Document, CachedXPathAPI) - Method in class edu.hust.go.term.OwlGo_term
 
setRelationship(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.OboXmlGo_term
 
setStr(HashMap, String) - Method in class edu.hust.go.term.OBOGO_term
 
setSynonym(Document, CachedXPathAPI) - Method in class edu.hust.go.term.OboXmlGo_term
 
setTargetElementName(String) - Method in class edu.hust.go.model.XmlGoParser
 
setVector(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.OboXmlGo_term
 
setVector(Document, CachedXPathAPI, String) - Method in class edu.hust.go.term.RdfXmlGo_term
 
setVector(HashMap, String) - Method in class edu.hust.go.term.OBOGO_term
 
setXref(NodeList, CachedXPathAPI) - Method in class edu.hust.go.term.OboXmlGo_term
 
Similarity - class edu.hust.go.model.Similarity.
 
Similarity() - Constructor for class edu.hust.go.model.Similarity
 
skippedEntity(String) - Method in class edu.hust.go.model.XmlGoParser
 
startCDATA() - Method in class edu.hust.go.model.XmlGoParser
 
startDocument() - Method in class edu.hust.go.model.XmlGoParser
 
startDTD(String, String, String) - Method in class edu.hust.go.model.XmlGoParser
 
startElement(String, String, String, Attributes) - Method in class edu.hust.go.model.XmlGoParser
 
startEntity(String) - Method in class edu.hust.go.model.XmlGoParser
 
startPrefixMapping(String, String) - Method in class edu.hust.go.model.XmlGoParser
 
statusBar - Variable in class example.GUIExample
 
subset - Variable in class edu.hust.go.term.OBOGO_term
 
subset - Variable in class edu.hust.go.term.OboXmlGo_term
 
synonym - Variable in class edu.hust.go.term.OBOGO_term
 
synonym - Variable in class edu.hust.go.term.OboXmlGo_term
 
synonym - Variable in class edu.hust.go.term.RdfXmlGo_term
 

T

target - Variable in class edu.hust.go.model.GoParser
 
targetElementName - Variable in class edu.hust.go.model.XmlGoParser
 
termMap - Variable in class edu.hust.go.model.GoParser
 
text - Variable in class edu.hust.go.term.OboXmlGo_term.Synonym
 
textPanel - Variable in class example.GUIExample
 
threadActive() - Method in class edu.hust.go.model.GoParser
 
threadName - Variable in class edu.hust.go.model.GoAdaptor
 
threadNumber - Variable in class edu.hust.go.model.GoParser
 
threadPool - Variable in class edu.hust.go.model.GoParser
 
toString() - Method in class edu.hust.go.gui.GoCell
 
toString() - Method in class edu.hust.go.model.GoException
 
toString() - Method in class edu.hust.go.term.DefaultGO_term
 
transform(String) - Method in class edu.hust.go.term.OwlGo_term
 
transForm(String[], HashMap, HashSet) - Static method in class edu.hust.go.gui.GraphCreator
transforms standard GO ids into GO terms.
transForm(String, HashMap) - Static method in class example.GraphModelExample
 
treeGraphView - Variable in class example.GUIExample
 
treeView - Variable in class example.GUIExample
 

U

union_of - Variable in class edu.hust.go.term.OboXmlGo_term
 
unparsedEntityDecl(String, String, String, String) - Method in class edu.hust.go.model.XmlGoParser
 
use_term - Variable in class edu.hust.go.term.OBOGO_term
 

V

viewPanel - Variable in class example.GUIExample
 
viewType - Variable in class example.GUIExample
 
viewTypeComboBox - Variable in class example.GUIExample
 

W

warning(SAXParseException) - Method in class edu.hust.go.model.XmlGoParser
 

X

XmlGoParser - class edu.hust.go.model.XmlGoParser.
 
XmlGoParser(String) - Constructor for class edu.hust.go.model.XmlGoParser
 
XmlGoParser(String, int) - Constructor for class edu.hust.go.model.XmlGoParser
 
XmlGoParser(String, int, int) - Constructor for class edu.hust.go.model.XmlGoParser
 
xref_analog - Variable in class edu.hust.go.term.OBOGO_term
 
xref_analog - Variable in class edu.hust.go.term.OboXmlGo_term
 
xref_unknown - Variable in class edu.hust.go.term.OBOGO_term
 
xref_unknown - Variable in class edu.hust.go.term.OboXmlGo_term
 

Z

ZZL - Static variable in class edu.hust.go.model.Similarity
 

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