Uses of Interface
edu.hust.go.term.GO_term

Packages that use GO_term
edu.hust.go.gui   
edu.hust.go.model   
edu.hust.go.term   
example   
 

Uses of GO_term in edu.hust.go.gui
 

Constructors in edu.hust.go.gui with parameters of type GO_term
GoCell(edu.hust.go.term.GO_term userObject)
           
 

Uses of GO_term in edu.hust.go.model
 

Methods in edu.hust.go.model that return GO_term
abstract  edu.hust.go.term.GO_term GoParser.getGoTermById(java.lang.String id)
           
 edu.hust.go.term.GO_term OboGoParser.getGoTermById(java.lang.String id)
           
 edu.hust.go.term.GO_term OboXmlGoParser.getGoTermById(java.lang.String id)
           
 edu.hust.go.term.GO_term OwlGoParser.getGoTermById(java.lang.String id)
           
 edu.hust.go.term.GO_term RdfXmlGoParser.getGoTermById(java.lang.String id)
           
 

Methods in edu.hust.go.model with parameters of type GO_term
 float GoGraphModel.evalSimilarity(edu.hust.go.term.GO_term node1, edu.hust.go.term.GO_term node2)
           
 float GoGraphModel.evalSimilarity(edu.hust.go.term.GO_term node1, edu.hust.go.term.GO_term node2)
           
 float GoGraphModel.evalSimilarity(edu.hust.go.term.GO_term node1, edu.hust.go.term.GO_term node2, byte type)
          evaluate the similarity of two nodes in directed acylic graph
 float GoGraphModel.evalSimilarity(edu.hust.go.term.GO_term node1, edu.hust.go.term.GO_term node2, byte type)
          evaluate the similarity of two nodes in directed acylic graph
 java.lang.Object[][] GoGraphModel.getPathsOfNode2Root(edu.hust.go.term.GO_term node)
           
 boolean GoGraphModel.inOnePathway(edu.hust.go.term.GO_term node1, edu.hust.go.term.GO_term node2)
          Tell whether two nodes are in one pathway
 boolean GoGraphModel.inOnePathway(edu.hust.go.term.GO_term node1, edu.hust.go.term.GO_term node2)
          Tell whether two nodes are in one pathway
 java.util.HashMap GoGraphModel.getPathsBetweenNodes(edu.hust.go.term.GO_term node1, edu.hust.go.term.GO_term node2)
          get pathway between two Go terms
 java.util.HashMap GoGraphModel.getPathsBetweenNodes(edu.hust.go.term.GO_term node1, edu.hust.go.term.GO_term node2)
          get pathway between two Go terms
 

Constructors in edu.hust.go.model with parameters of type GO_term
GoException(edu.hust.go.term.GO_term source, edu.hust.go.term.GO_term target)
           
GoException(edu.hust.go.term.GO_term source, edu.hust.go.term.GO_term target)
           
 

Uses of GO_term in edu.hust.go.term
 

Classes in edu.hust.go.term that implement GO_term
 class DefaultGO_term
           
 class OBOGO_term
           
 class OboXmlGo_term
           
 class OwlGo_term
           
 class RdfXmlGo_term
           
 

Uses of GO_term in example
 

Methods in example that return GO_term
(package private) static edu.hust.go.term.GO_term GraphModelExample.transForm(java.lang.String rawId, java.util.HashMap goMap)
           
 

Methods in example with parameters of type GO_term
(package private) static void GraphModelExample.getPathway(edu.hust.go.model.GoGraphModel graphModel, edu.hust.go.term.GO_term term)
           
(package private) static void GraphModelExample.getPathway(edu.hust.go.model.GoGraphModel graphModel, edu.hust.go.term.GO_term term1, edu.hust.go.term.GO_term term2)
           
(package private) static void GraphModelExample.getPathway(edu.hust.go.model.GoGraphModel graphModel, edu.hust.go.term.GO_term term1, edu.hust.go.term.GO_term term2)
           
(package private) static void GraphModelExample.getSimilarity(edu.hust.go.model.GoGraphModel graphModel, edu.hust.go.term.GO_term term1, edu.hust.go.term.GO_term term2, byte methodType)
           
(package private) static void GraphModelExample.getSimilarity(edu.hust.go.model.GoGraphModel graphModel, edu.hust.go.term.GO_term term1, edu.hust.go.term.GO_term term2, byte methodType)