<<<<< Input Tree (Top_node = 29) >>>>>

( seq0020{28}:0.1529, ( seq0018{26}:0.1741, ( ( seq0015{23}:0.1492, ( seq0013{20}:0.1827, seq0014{21}:0.1659 ){22}:0.0049 ){24}:0.0297, ( ( seq0008{16}:0.0865, seq0009{17}:0.1286 ){18}:0.0335, ( ( seq0005{10}:0.0368, ( seq0006{11}:0.0286, seq0007{12}:0.0362 ){13}:0.0065 ){14}:0.0368, ( ( seq0000{1}:0.0054, seq0001{2}:0.0081 ){3}:0.0232, ( seq0002{4}:0.0189, ( seq0003{5}:0.0124, seq0004{6}:0.0108 ){7}:0.0070 ){8}:0.0270 ){9}:0.0205 ){15}:0.0703 ){19}:0.0383 ){25}:0.0314 ){27}:0.0130 ){29};


<<<<< Input MSA >>>>>

#{Sequences} = 15 .
#{Sites in the segment}_ref = 74 ,
#{Sites in the segment}_rec = 72 .


<< Correspondence between sequence IDs and sequence indices >>

Indx:	Seq_ID

0:	seq0000
1:	seq0001
2:	seq0002
3:	seq0003
4:	seq0004
5:	seq0005
6:	seq0006
7:	seq0007
8:	seq0008
9:	seq0009
10:	seq0013
11:	seq0014
12:	seq0015
13:	seq0018
14:	seq0020


<< Original Segment of the Reference Alignment: >>

(position)     000000000011111111112222222222333333333344444444445555555555
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        ---------------------------------------GTAGTCACT-CTTAAGGAGCT
seq0001        ---------------------------------------GTAGTCACT-CTTAAGGAGCT
seq0002        ---------------------------------------GTATTCACT-CTGAAGGAGCT
seq0003        ---------------------------------------ATATTCACT-CTGAAGGAGCT
seq0004        ---------------------------------------ATATTCACT-CTGAAGGAGCT
seq0005        ---------------------------------------ATAGTCACT-CTTAAGGAGCT
seq0006        ---------------------------------------ATAGACAGT-CTTAAAGAGCG
seq0007        ---------------------------------------ATAGTCACT-CTTAAGGAGCT
seq0008        ---------------------------------------ATAGTCAGT-CTT---GAGCT
seq0009        ---------------------------------------ATAGGCGCT-CTTAAGGAGCT
seq0013        ---------------------------------------AAAGTGGCTCCTTAAGCAGCT
seq0014        ---------------------------------------AAAGGCACC-C-TAAGGATTT
seq0015        --------------------------------------T---------------------
seq0018        GAATTCGACGTACCAATTAGCAGGTGCACACATGGTAG-ATAGACACT-CATAAGGAGCT
seq0020        ---------------------------------------TTAGTCACT-ATTAAGGAGCT

(position)     66666666667777
               01234567890123
                             
seq0000        CGATCAAGCGT-AC
seq0001        CGATCAAGCGT-AC
seq0002        CGATCAAGCGT-AC
seq0003        CGATCAATCGT-AC
seq0004        CGATCAATCGT-AC
seq0005        CGCTCAAGCGT-CC
seq0006        CGATCAAGCGT-CC
seq0007        CGATCAA-CGT-CG
seq0008        GTGTGAATCGTTCC
seq0009        ATGTTAATCGTTGC
seq0013        CT-TTAAGCGT-AA
seq0014        GTGTCAAGCGT-CA
seq0015        ----TAAGGAT-TC
seq0018        GTGCGGAGCGT-CC
seq0020        GTTTGAAGCGT-CC


<< Original Segment of the Reconstructed Alignment: >>

(position)     000000000011111111112222222222333333333344444444445555555555
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        GTAGTC--------------------------------------ACTCTTAAGGAGCTCG
seq0001        GTAGTC--------------------------------------ACTCTTAAGGAGCTCG
seq0002        GTATTC--------------------------------------ACTCTGAAGGAGCTCG
seq0003        ATATTC--------------------------------------ACTCTGAAGGAGCTCG
seq0004        ATATTC--------------------------------------ACTCTGAAGGAGCTCG
seq0005        ATAGTC--------------------------------------ACTCTTAAGGAGCTCG
seq0006        ATAGAC--------------------------------------AGTCTTAAAGAGCGCG
seq0007        ATAGTC--------------------------------------ACTCTTAAGGAGCTCG
seq0008        ATAGTC--------------------------------------AGTCTT---GAGCTGT
seq0009        ATAGGC--------------------------------------GCTCTTAAGGAGCTAT
seq0013        AAAGTG--------------------------------------GCTCCTTAAGCAGCTC
seq0014        AAAGGC--------------------------------------ACCC-TAAGGATTTGT
seq0015        TTAAGG--------------------------------------ATTC------------
seq0018        GAATTCGACGTACCAATTAGCAGGTGCACACATGGTAGATAGACACTCATAAGGAGCTGT
seq0020        TTAGTC--------------------------------------ACTATTAAGGAGCTGT

(position)     666666666677
               012345678901
                           
seq0000        ATCAAGCGTAC-
seq0001        ATCAAGCGTAC-
seq0002        ATCAAGCGTAC-
seq0003        ATCAATCGTAC-
seq0004        ATCAATCGTAC-
seq0005        CTCAAGCGTCC-
seq0006        ATCAAGCGTCC-
seq0007        ATCAA-CGTCG-
seq0008        GTGAATCGTTCC
seq0009        GTTAATCGTTGC
seq0013        TTTAAGCGTAA-
seq0014        GTCAAGCGTCA-
seq0015        ------------
seq0018        GCGGAGCGTCC-
seq0020        TTGAAGCGTCC-


<<<<< Preliminary (0): Map the residue numbers onto the reference & reconstructed MSAs... >>>>>

<<<<< Preliminary (1): Map the position shifts (from reference to reconstructed) onto the Reconstructed MSA... >>>>>

<< Output of 'map_shifts_respos_bw_2msas' >>

($shift_lf, $shift_rf) = (0, -2) .

[ Shifts in the Reconstructed MSA ]

(position)	    0    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   49

seq0000   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0001   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0002   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0003   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0004   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0005   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0006   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0007   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0008   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0009   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2
seq0013   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -1   -1   -1
seq0014   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2    -   -2
seq0015   	  -38  -63  -63  -63  -63  -63    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -  -25  -25  -26  -26    -    -
seq0018   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2
seq0020   	  -39  -39  -39  -39  -39  -39    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -1   -1   -1   -2   -2   -2



(position)	   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   65   66   67   68   69   70   71

seq0000   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0001   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0002   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0003   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0004   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0005   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0006   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0007   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2    -   -2   -2   -2   -3   -3    -
seq0008   	    -    -    -   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2
seq0009   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2
seq0013   	   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0014   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0015   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0018   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -
seq0020   	   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -2   -3   -3    -




[INFORMATION] The original $commoner_shift_flank = -2. Thus, we will shift the entire reconstructed MSA ...

<< REVISED Output of 'map_shifts_respos_bw_2msas' >>

New ($shift_lf, $shift_rf) = (0, 0) .

[ New Shifts in the Reconstructed MSA ]

(position)	    0    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   49

seq0000   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0001   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0002   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0003   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0004   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0005   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0006   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0007   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0008   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0009   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0013   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    1
seq0014   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0
seq0015   	    -    -  -36  -61  -61  -61  -61  -61    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -  -23  -23  -24  -24
seq0018   	    -    -    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    2    1    1    1    1    1    1    1    1    1    0
seq0020   	    -    -  -37  -37  -37  -37  -37  -37    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    1    1    1    0



(position)	   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   65   66   67   68   69   70   71   72   73

seq0000   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0001   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0002   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0003   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0004   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0005   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0006   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0007   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    0    0    0   -1   -1    -
seq0008   	    0    0    -    -    -    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0009   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0013   	    1    1    1    1    1    1    1    1    1    1    1    1    1    0    0    0    0    0    0    0    0   -1   -1    -
seq0014   	    -    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0015   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0018   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -
seq0020   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0   -1   -1    -



<<<<< Preliminary (2): Put together the mapped position shifts into some Classes ... >>>>>

<< Output of 'br_list_classes_shift_respos' >>

$commoner_shift_flank = 0 .


<<<<< Preliminary (3'): For each MINI-class of shifts, parsimoniously infer the branch(es) separating the affected sequences from the rest. >>>>>

<<<<< ADDITIONAL Preliminary Process (3.5'): Split mini-classes each of which consists of unnaturally remote sequences... >>>>>

... NO CHANGES were made ...


<<<<< Preliminary (4): Merge the MINI-classes of shifts. >>>>>

<<<<< Preliminary (5'): Identify 'trivial' MINI-blocks. >>>>>

<<<<< Preliminary (6): Identify gap-pattern blocks, calculate their Dollo parsimony scenarios, and the initial parsimony candidate scenario of each gapped segment in the segmental MSAs (reference & reconstructed). >>>>>

<<<<< Preliminary (7'): Lump together some neighboring MINI-blocks affecting the identical set of sequences. >>>>>

<< Output of 'lump_together_similar_blocks': Content of @{$composite_miniblocks} (#{composite_miniblocks} = 7) >>

Indx_cmp_miniblock	beg_cmb	end_cmb	mrca	indices,constituent,miniblocks	list,position,shifts	merger,types	indices,involved,seqs

0	2	7	29	1	-37	n/a	0,1,2,3,4,5,6,7,8,9,10,11,14
1	2	2	23	2	-36	n/a	12
2	2	48	26	11,9	2,1	0	13
3	3	49	23	0,4,3	-61,-23,-24	0,0	12
4	46	48	29	8	1	n/a	0,1,2,3,4,5,6,7,8,9,11,14
5	46	62	20	10	1	n/a	10
6	71	72	29	5	-1	n/a	0,1,2,3,4,5,6,7,10,11,13,14



<<<<< Preliminary (8): Reorganize the list of insertions/deletions in the initial candidate of parsimonious scenarios, for reference and reconstructed MSAs. >>>>>

<<< (1) For Reference MSA >>>

<<< (2) For Reconstructed MSA >>>

<<<<< Preliminary (9): Identify the pairs of 'equivalent' indel events in the reference & reconstructed MSAs...  >>>>>

<<<<< (i) MAIN PROCESS (1st Round)!!!: Associate each Composite 'MINI-Block' with (an) appropriate type(s) of MSA error(s)... (#{composite blocks} = 7) >>>>>


[[ Results of the Main Process (1st Round) ]]

[ Contents of @cblk_wise_cts_invlvd_indels ]

Indx_cmp_blk	#{rlv_indels}_ref	#{rlv_indels}_rec	#{rltd_indels}_ref	#{rltd_indels}_rec	#{other_involved}_ref	#{other_involved}_rec

0
1	2	0	0	0	0	0
2	1	1	0	0	0	0
3	1	1	0	0	0	0
4
5	2	0	0	0	0	0
6	1	1	0	0	0	0


[ Skipped Composite-Blocks (#{cblocks} = 2): 0, 4 . ]


[ Contents of @cblk_wise_msa_errors ]

Indx_cmp_blk	Indx_error	len_cblk_ref	len_cblk_rec	Type	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(ref)	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(rec)

0	Skipped!!(NO_RELEVANT_BRANCH)
1	0	1	1	Complex(???)	23:39:63:X/23:38:38:-	None
2	0	48	47	Shift(???)	26:0:37:-	26:8:45:-
3	0	10	47	Complex(???)	23:39:63:X	23:50:72:X
4	Skipped!!(NO_RELEVANT_BRANCH)
5	0	17	17	Purge(?)	20:62:62:X/20:48:48:-	None
6	0	2	2	Shift	18:71:71:-	18:73:73:-


[ Contents of %indel_ref2assoc_cblks ]

Br:beg:end(ref)	indices,of,associated,composite-blocks

26:0:37	2
23:38:38	1
23:39:63	1,3
20:48:48	5
21:50:50	None
16:52:54	{Equivalent to '16:52:54'(rec)}
20:62:62	5
12:67:67	{Equivalent to '12:67:67'(rec)}
18:71:71	6


[ Contents of %indel_rec2assoc_cblks ]

Br:beg:end(rec)	indices,of,associated,composite-blocks

26:8:45	2
23:50:72	3
21:50:50	None
16:52:54	{Equivalent to '16:52:54'(ref)}
12:67:67	{Equivalent to '12:67:67'(ref)}
18:73:73	6


<<<< (ii) MAIN PROCESS (2nd Round)!!: Attempt to 'hard-link' skipped composite 'MINI-Block's to non-skipped ones, and to resolve Composite 'MINI-Block's associated with 'Complex' errors... >>>>

[[ Interim Results ]]

[ Contents of %cb2hard_linked (#{keys} = 1) ]

Indx_cmp_blk	=> [indices,cblks,hard,linked,by,the,key]

4	=> [2,5],


[ Contents of %cb2hard_linking (#{keys} = 2) ]

Indx_cmp_blk	=> [indices,cblks,hard,linking,the,key]

2	=> [4],
5	=> [4],


[ 'Soft-linked' pairs of composite-blocks (#{pairs} = 1) ]

Indx_cblk_A	indx_cblk_B

1	3


[[ Results of the Main Process (2nd Round) ]]

[ For the 1 th pair: (1, 3) ]


{ The representative path is: 1  -> 3 }


( Rough frameworks of the 1st- & 2nd-moved c-blocks )

Subject_c-block	beg_cb	end_cb	shift_le	shift_re	rlv_branch	indices,invlvd,seqs,le	indices,invlvd,seqs,re

1st(intermediate)	2	2	-36	-36	23	12	12
2nd(reconstructed)	3	49	-61	-24	23	12	12


( Errors associated with the c-blocks )

Subject_c-block	Type	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(before)	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(after)

1st(intermediate)	Merge(complementary)(+shift(^2))(??)	23:39:63:X/23:38:38:-	23:3:63:X
2nd(reconstructed)	Complex	23:3:63:X/23:71:71:X/22:73:73:X	23:50:72:X


