<<<<< Input Tree (Top_node = 29) >>>>>

( seq0020{28}:0.1529, ( seq0018{26}:0.1741, ( ( seq0015{23}:0.1492, ( seq0013{20}:0.1827, seq0014{21}:0.1659 ){22}:0.0049 ){24}:0.0297, ( ( seq0008{16}:0.0865, seq0009{17}:0.1286 ){18}:0.0335, ( ( seq0005{10}:0.0368, ( seq0006{11}:0.0286, seq0007{12}:0.0362 ){13}:0.0065 ){14}:0.0368, ( ( seq0000{1}:0.0054, seq0001{2}:0.0081 ){3}:0.0232, ( seq0002{4}:0.0189, ( seq0003{5}:0.0124, seq0004{6}:0.0108 ){7}:0.0070 ){8}:0.0270 ){9}:0.0205 ){15}:0.0703 ){19}:0.0383 ){25}:0.0314 ){27}:0.0130 ){29};


<<<<< Input MSA >>>>>

#{Sequences} = 15 .
#{Sites in the segment}_ref = 79 ,
#{Sites in the segment}_rec = 72 .


<< Correspondence between sequence IDs and sequence indices >>

Indx:	Seq_ID

0:	seq0000
1:	seq0001
2:	seq0002
3:	seq0003
4:	seq0004
5:	seq0005
6:	seq0006
7:	seq0007
8:	seq0008
9:	seq0009
10:	seq0013
11:	seq0014
12:	seq0015
13:	seq0018
14:	seq0020


<< Original Segment of the Reference Alignment: >>

(position)     000000000011111111112222222222333333333344444444445555555555
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        A---CAGCCAAAATC-GGCTTTA----AC-------------------------------
seq0001        A---CAGCCAAAATC-GGCTTTA----AC-------------------------------
seq0002        A---CAGCCAAAATC-GGCTTTA----AC-------------------------------
seq0003        A---CAGCCAAAATC-GGCTTTA----AC-------------------------------
seq0004        A---CAGCCAAAATC-GGCTTTA----AC-------------------------------
seq0005        A---CAGCCAGAATC-GTCTTTA----AC-------------------------------
seq0006        A---CAGCCAGAATC-GTCTTTACATAAC-------------------------------
seq0007        A---CAGCCAGAATC-GTCTTTACATAAC-------------------------------
seq0008        C---CAGTCAAAATC-GTCTTTA----AG-------------------------------
seq0009        A---GAGCCCAAATC-G-------------------------------------------
seq0013        G-------GAA-A-C-GTCCTTG----AGCCGGTTGGAAAGAAATATACGTTCCTCATCA
seq0014        ------------------------------------------------------------
seq0015        A-------CT-AA-T-GTCCTTA----AT-------------------------------
seq0018        AATTCAGCCAAA--CGGTCTTCA----AG-------------------------------
seq0020        T---TAGCCAAA------------------------------------------------

(position)     6666666666777777777
               0123456789012345678
                                  
seq0000        -------GCCTATCTCTT-
seq0001        -------GCCTATCTCTT-
seq0002        -------CCCTATCTCTT-
seq0003        -------GCCTATCTCTT-
seq0004        -------GCCTATCTCTT-
seq0005        -------GCCTATCCCTT-
seq0006        -------GCCTATCTCTT-
seq0007        -------GCCAATCTCTT-
seq0008        -------CCCTATCCATTC
seq0009        --------CCCATCCATT-
seq0013        AATGATCGCCTTTT-ATT-
seq0014        ----------TTTAC----
seq0015        -------GCCTTTACACT-
seq0018        -------GCCTACACATT-
seq0020        -------------ACAAA-


<< Original Segment of the Reconstructed Alignment: >>

(position)     000000000011111111112222222222333333333344444444445555555555
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        ACAGC--CAAAATCGGCTT-------------------------------------TAAC
seq0001        ACAGC--CAAAATCGGCTT-------------------------------------TAAC
seq0002        ACAGC--CAAAATCGGCTT-------------------------------------TAAC
seq0003        ACAGC--CAAAATCGGCTT-------------------------------------TAAC
seq0004        ACAGC--CAAAATCGGCTT-------------------------------------TAAC
seq0005        ACAGC--CAGAATCGTCTT-------------------------------------TAAC
seq0006        ACAGC--CAGAATCGTCTTT---------------------------------ACATAAC
seq0007        ACAGC--CAGAATCGTCTTT---------------------------------ACATAAC
seq0008        CCAGT--CAAAATCGTCTT-------------------------------------TAAG
seq0009        AGAGC------------------------------------------------CCAAATC
seq0013        --------GGAAACGTCCTTGAGCCGGTTGGAAAGAAATATACGTTCCTCATCAAATGAT
seq0014        TTTAC-------------------------------------------------------
seq0015        --------ACTAATGTCCT-------------------------------------TAAT
seq0018        AATTCAGCCAAACGGTCTT-------------------------------------CAAG
seq0020        TTAGC-------------------------------------------------------

(position)     666666666677
               012345678901
                           
seq0000        GCCTATCTCTT-
seq0001        GCCTATCTCTT-
seq0002        CCCTATCTCTT-
seq0003        GCCTATCTCTT-
seq0004        GCCTATCTCTT-
seq0005        GCCTATCCCTT-
seq0006        GCCTATCTCTT-
seq0007        GCCAATCTCTT-
seq0008        CCCTATCCATTC
seq0009        GCCCATCCATT-
seq0013        CGCCTTTTATT-
seq0014        ------------
seq0015        GCCTTTACACT-
seq0018        GCCTACACATT-
seq0020        --CAAAACAAA-


<<<<< Preliminary (0): Map the residue numbers onto the reference & reconstructed MSAs... >>>>>

<<<<< Preliminary (1): Map the position shifts (from reference to reconstructed) onto the Reconstructed MSA... >>>>>

<< Output of 'map_shifts_respos_bw_2msas' >>

($shift_lf, $shift_rf) = (0, -7) .

[ Shifts in the Reconstructed MSA ]

(position)	    0    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   49

seq0000   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0001   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0002   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0003   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0004   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0005   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0006   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0007   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0008   	    0   -3   -3   -3   -3    -    -   -1   -1   -1   -1   -1   -1   -1   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0009   	    0   -3   -3   -3   -3    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0013   	    -    -    -    -    -    -    -    -    8    1    1    1    0   -1   -2   -2   -2   -2   -2   -2   -2   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6
seq0014   	  -70  -70  -70  -70  -70    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0015   	    -    -    -    -    -    -    -    -    8    1    1    0    0   -1   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0018   	    0    0    0    0    0    0    0    0    0    0    0    0   -2   -2   -2   -2   -2   -2   -2    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0020   	    0   -3   -3   -3   -3    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -



(position)	   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   65   66   67   68   69   70   71

seq0000   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0001   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0002   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0003   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0004   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0005   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0006   	    -    -    -   31   31   31   31   31   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0007   	    -    -    -   31   31   31   31   31   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0008   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7
seq0009   	    -    -    -   45   45   45   45   45   45   45   44   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0013   	   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -6   -7   -7   -7    -
seq0014   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0015   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0018   	    -    -    -    -    -    -   35   35   31   31   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7   -7    -
seq0020   	    -    -    -    -    -    -    -    -    -    -    -    -   54   54   54   54   -7   -7   -7   -7   -7    -




[INFORMATION] The original $commoner_shift_flank = -7. Thus, we will shift the entire reconstructed MSA ...

<< REVISED Output of 'map_shifts_respos_bw_2msas' >>

New ($shift_lf, $shift_rf) = (0, 0) .

[ New Shifts in the Reconstructed MSA ]

(position)	    0    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   49

seq0000   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0001   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0002   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0003   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0004   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0005   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0006   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0007   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0008   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    6    6    6    6    6    6    6    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0009   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0013   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   15    8    8    8    7    6    5    5    5    5    5    5    5    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
seq0014   	    -    -    -    -    -    -    -  -63  -63  -63  -63  -63    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0015   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   15    8    8    7    7    6    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0018   	    -    -    -    -    -    -    -    7    7    7    7    7    7    7    7    7    7    7    7    5    5    5    5    5    5    5    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0020   	    -    -    -    -    -    -    -    7    4    4    4    4    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -



(position)	   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   65   66   67   68   69   70   71   72   73   74   75   76   77   78

seq0000   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0001   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0002   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0003   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0004   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0005   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0006   	    -    -    -    -    -    -    -    -    -    -   38   38   38   38   38   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0007   	    -    -    -    -    -    -    -    -    -    -   38   38   38   38   38   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0008   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    0
seq0009   	    -    -    -    -    -    -    -    -    -    -   52   52   52   52   52   52   52   51    0    0    0    0    0    0    0    0    0    0    -
seq0013   	    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1    0    0    0    -
seq0014   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0015   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0018   	    -    -    -    -    -    -    -    -    -    -    -    -    -   42   42   38   38    0    0    0    0    0    0    0    0    0    0    0    -
seq0020   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   61   61   61   61    0    0    0    0    0    -



<<<<< Preliminary (2): Put together the mapped position shifts into some Classes ... >>>>>

<< Output of 'br_list_classes_shift_respos' >>

$commoner_shift_flank = 0 .


<<<<< Preliminary (3'): For each MINI-class of shifts, parsimoniously infer the branch(es) separating the affected sequences from the rest. >>>>>

<<<<< ADDITIONAL Preliminary Process (3.5'): Split mini-classes each of which consists of unnaturally remote sequences... >>>>>

... NO CHANGES were made ...


<<<<< Preliminary (4): Merge the MINI-classes of shifts. >>>>>

<<<<< Preliminary (5'): Identify 'trivial' MINI-blocks. >>>>>

<<<<< Preliminary (6): Identify gap-pattern blocks, calculate their Dollo parsimony scenarios, and the initial parsimony candidate scenario of each gapped segment in the segmental MSAs (reference & reconstructed). >>>>>

<<<<< Preliminary (7'): Lump together some neighboring MINI-blocks affecting the identical set of sequences. >>>>>

<< Output of 'lump_together_similar_blocks': Content of @{$composite_miniblocks} (#{composite_miniblocks} = 18) >>

Indx_cmp_miniblock	beg_cmb	end_cmb	mrca	indices,constituent,miniblocks	list,position,shifts	merger,types	indices,involved,seqs

0	7	7	29	9	7	n/a	0,1,2,3,4,5,6,7,8,9,14
1	7	11	21	0	-63	n/a	11
2	7	18	26	10	7	n/a	13
3	8	11	29	2	4	n/a	0,1,2,3,4,5,6,7,8,9,14
4	14	20	19	8	6	n/a	0,1,2,3,4,5,6,7,8
5	15	15	24	15	15	n/a	10,12
6	16	19	20	14,12	8,7	0	10
7	16	17	23	13	8	n/a	12
8	18	19	23	11	7	n/a	12
9	19	25	26	4	5	n/a	13
10	20	20	24	7	6	n/a	10,12
11	21	25	25	3	5	n/a	0,1,2,3,4,5,8,12
12	21	74	20	5,1	5,1	0	10
13	21	66	13	6,17	5,38	0	6,7
14	60	67	17	20,19	52,51	0	9
15	63	64	27	18	42	n/a	0,1,2,3,4,5,8,12,13
16	65	66	27	16	38	n/a	0,1,2,3,4,5,8,12,13
17	69	72	28	21	61	n/a	14



<<<<< Preliminary (8): Reorganize the list of insertions/deletions in the initial candidate of parsimonious scenarios, for reference and reconstructed MSAs. >>>>>

<<< (1) For Reference MSA >>>

<<< (2) For Reconstructed MSA >>>

<<<<< Preliminary (9): Identify the pairs of 'equivalent' indel events in the reference & reconstructed MSAs...  >>>>>

<<<<< (i) MAIN PROCESS (1st Round)!!!: Associate each Composite 'MINI-Block' with (an) appropriate type(s) of MSA error(s)... (#{composite blocks} = 18) >>>>>


[[ Results of the Main Process (1st Round) ]]

[ Contents of @cblk_wise_cts_invlvd_indels ]

Indx_cmp_blk	#{rlv_indels}_ref	#{rlv_indels}_rec	#{rltd_indels}_ref	#{rltd_indels}_rec	#{other_involved}_ref	#{other_involved}_rec

0	0	0	0	1	0	0
1	2	0	1	1	0	0
2	1	1	1	0	0	1
3	1	0	0	1	0	0
4	1	0	1	1	0	0
5	1	1	0	0	0	0
6	0	0	0	0	0	0
7	1	0	1	0	0	0
8	1	0	1	0	0	0
9	1	0	2	1	0	0
10	0	0	1	0	0	0
11
12	2	1	0	0	0	0
13	1	0	0	0	0	0
14	1	0	0	2	0	0
15	0	0	0	1	0	0
16	0	0	1	0	0	0
17	0	1	1	0	0	0


[ Skipped Composite-Blocks (#{cblocks} = 2): 6, 11 . ]


[ Contents of @cblk_wise_msa_errors ]

Indx_cmp_blk	Indx_error	len_cblk_ref	len_cblk_rec	Type	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(ref)	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(rec)

0	0	1	1	NO_ASSOCIATED_EVENT(???)	None	23:7:11:X
1	0	5	5	Complex	21:0:69:X/21:75:77:X/20:74:74:X	20:7:11:X
2	0	12	12	Partial-Neighborng-Branch-Merge(+shift(?))(?)	26:1:3:-/25:12:12:-	26:12:13:-/27:14:68:-
3	0	4	4	Complex(???)	24:4:7:X	23:7:11:X
4	0	7	7	Complex(???)	19:13:13:-/24:4:7:X	24:14:14:X
5	0	1	1	Complex(???)	24:4:7:X	24:14:14:X
6	Skipped!!(NO_ASSOCIATED_EVENT(???))
7	0	2	2	Complex(???)	23:10:10:X/24:4:7:X	None
8	0	2	2	Complex(???)	23:10:10:X/22:11:11:X	None
9	0	7	7	Complex	26:15:15:-/25:12:12:-/27:14:72:-	25:26:62:-
10	0	1	1	NO_ASSOCIATED_EVENT(???)	19:13:13:-	None
11	Skipped!!(MULTIPLE_RELEVANT_BRANCHES(#{branches}=2))
12	0	58	54	Complex(???)	20:74:74:X/20:29:66:-	20:27:59:-
13	0	13	46	Complex(???)	13:23:26:-	None
14	0	9	8	Complex	17:17:67:X	18:26:26:X/16:60:62:X
15	0	2	2	NO_ASSOCIATED_EVENT(???)	None	23:26:62:X
16	0	2	2	NO_ASSOCIATED_EVENT(???)	20:29:66:-	None
17	0	4	4	Complex(???)	25:12:12:-	27:14:68:-


[ Contents of %indel_ref2assoc_cblks ]

Br:beg:end(ref)	indices,of,associated,composite-blocks

21:0:69	1
26:1:3	2
24:4:7	3,4,5,7
23:10:10	7,8
22:11:11	8
25:12:12	2,9,17
19:13:13	4,10
27:14:72	9
26:15:15	9
17:17:67	14
13:23:26	13
20:29:66	12,16
20:74:74	1,12
21:75:77	1
16:78:78	{Equivalent to '16:78:78'(rec)}


[ Contents of %indel_rec2assoc_cblks ]

Br:beg:end(rec)	indices,of,associated,composite-blocks

23:7:11	0,3
20:7:11	1
26:12:13	2
27:14:68	2,17
24:14:14	4,5
17:14:25	None
21:15:77	None
25:26:62	9
23:26:62	15
18:26:26	14
10:26:62	None
9:26:62	None
20:27:59	12
16:60:62	14
16:78:78	{Equivalent to '16:78:78'(ref)}


<<<< (ii) MAIN PROCESS (2nd Round)!!: Attempt to 'hard-link' skipped composite 'MINI-Block's to non-skipped ones, and to resolve Composite 'MINI-Block's associated with 'Complex' errors... >>>>

[[ Interim Results ]]

[ Contents of %cb2hard_linked (#{keys} = 2) ]

Indx_cmp_blk	=> [indices,cblks,hard,linked,by,the,key]

10	=> [4],
11	=> [9,12,13],


[ Contents of %cb2hard_linking (#{keys} = 4) ]

Indx_cmp_blk	=> [indices,cblks,hard,linking,the,key]

4	=> [10],
9	=> [11],
12	=> [11],
13	=> [11],


[ 'Soft-linked' pairs of composite-blocks (#{pairs} = 1) ]

Indx_cblk_A	indx_cblk_B

1	12


[[ Results of the Main Process (2nd Round) ]]

[ For the 1 th pair: (1, 12) ]

