<<<<< Input Tree (Top_node = 29) >>>>>

( seq0020{28}:0.1529, ( seq0018{26}:0.1741, ( ( seq0015{23}:0.1492, ( seq0013{20}:0.1827, seq0014{21}:0.1659 ){22}:0.0049 ){24}:0.0297, ( ( seq0008{16}:0.0865, seq0009{17}:0.1286 ){18}:0.0335, ( ( seq0005{10}:0.0368, ( seq0006{11}:0.0286, seq0007{12}:0.0362 ){13}:0.0065 ){14}:0.0368, ( ( seq0000{1}:0.0054, seq0001{2}:0.0081 ){3}:0.0232, ( seq0002{4}:0.0189, ( seq0003{5}:0.0124, seq0004{6}:0.0108 ){7}:0.0070 ){8}:0.0270 ){9}:0.0205 ){15}:0.0703 ){19}:0.0383 ){25}:0.0314 ){27}:0.0130 ){29};


<<<<< Input MSA >>>>>

#{Sequences} = 15 .
#{Sites in the segment}_ref = 126 ,
#{Sites in the segment}_rec = 126 .


<< Correspondence between sequence IDs and sequence indices >>

Indx:	Seq_ID

0:	seq0000
1:	seq0001
2:	seq0002
3:	seq0003
4:	seq0004
5:	seq0005
6:	seq0006
7:	seq0007
8:	seq0008
9:	seq0009
10:	seq0013
11:	seq0014
12:	seq0015
13:	seq0018
14:	seq0020


<< Original Segment of the Reference Alignment: >>

(position)     000000000000000000000000000000000000000000000000000000000000
               000000000011111111112222222222333333333344444444445555555555
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        CACAAGGGAGGAAGTGGCGGGCTCATGGATGAGTGCTCAGATAGCGTGTGCATCACGAAC
seq0001        CACAAGGGAGGAAGTGGCGGGCTCATGGATGAGTGCTCAGATAGCGTGTGCATCACGAAC
seq0002        CACAGGGGAGGAAGTGGCGGGCTCATGGATGAGTGGTCAGATAGCGTGTGCATCAGGAAC
seq0003        CACAGGGGAGGAAGTGGCGGGCTCATGGATCAGTGGTCAGATAGCGTGTGCATCAGGAAC
seq0004        CACAGGGGAGGAAGTGGCGGGCTCATGGATGAGTGGTCAGATAGCGTGTGCATCAGGAAC
seq0005        CACAAGGGAGGAAGTGGCGGGCTCTTGGACGAGTGCTCAGATAGCGTGTGCATAACGAAC
seq0006        CACAAGGGAGGAAGTGGCGGGCTCTTGGAGGAGTGCTCAGATAGCGTGTGCATCACGAAC
seq0007        CACAAGTGAGGAAGTGGCGGGCTCTTCGACGAGTGTTCAGATAGCGTGTGCATCACGAAC
seq0008        CACAAGGGAGGAAGTAGCCGACTCTTTTATGAGTGATCAGATAGCGTGTGCAACACGAAC
seq0009        CACAAGGGAGGAAGTAGCGGACTCTTGTATAAGTGATCAGATACCCTGTGCAACGCGAAC
seq0013        ------------------------------------------------------------
seq0014        ------------------------------------------------------------
seq0015        ------------------------------------------------------------
seq0018        ------------------------------------------------------------
seq0020        ------------------------------------------------------------

(position)     000000000000000000000000000000000000000011111111111111111111
               666666666677777777778888888888999999999900000000001111111111
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        TTCAACCTTAGATTTTATGTAACAAGGCAATCCCCGTACCGTGTCGGCGAGTCCCCGAAG
seq0001        TGCAACCTTAGAGTTTATGTAACAAGGCAATCCCCGTACCGTGTCGGCGAGTCCCCGAAG
seq0002        TGCAACCTTAGAGGTT-TGTCACAAGGCAA--------CCGTGTCGGCGAGTCCTCGAAG
seq0003        TGCAACCTTAGAGTTT-TGTCACAAGGCAA--------GCGTGTCGGCGAGTCCTCGAAG
seq0004        TGCAACCTTAGAGTTT-TGTCACAAGGCAA--------GCGTGTCGGCGAGTCCTCGAAG
seq0005        GGCAC-CTTAGATTTT-TGTAACAAGGCAA--------CAATGTCGGCGAGTTCTCGAAG
seq0006        TGCACCCTTAGATTTT-TGTAACAAGGCAA--------CAATGTCGGCGAGTTCTCGAAG
seq0007        TGCGCCCTTAGATTTT-TGTTACAAGGCAA--------CAATGTCGGCGAGTTCTCGAAG
seq0008        TGTGACCTTTAATTTT-GGTAAAAAGGCAT--------CAGTGTT-GCGGGTTCTAGACC
seq0009        TGTAACCTTTG------------------------------------CGGATCCTCGAAG
seq0013        -----------------------------------------------CG-GTGCTTTAAG
seq0014        -----------------------------------------------C-GGAACTAGAAG
seq0015        -----------------------------------------------CGAGTTGTCGAA-
seq0018        -----------------------------------------------CGGGTCC------
seq0020        -----------------------------------------------CTGGTCGTCTAAG

(position)     111111
               222222
               012345
                     
seq0000        AGTTTG
seq0001        ACTTTG
seq0002        ACTTTG
seq0003        ACTTTG
seq0004        ACTTTG
seq0005        ACTTTG
seq0006        ACTTTG
seq0007        ACTTTG
seq0008        ACTTT-
seq0009        ACTTTG
seq0013        ACTGCG
seq0014        ACGTAC
seq0015        ACTTCG
seq0018        -----C
seq0020        ACTTTG


<< Original Segment of the Reconstructed Alignment: >>

(position)     000000000000000000000000000000000000000000000000000000000000
               000000000011111111112222222222333333333344444444445555555555
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        CACAAGGGAGGAAGTGGCGGGCTCATGGATGAGTGCTCAGATAGCGTGTGCATCACGAAC
seq0001        CACAAGGGAGGAAGTGGCGGGCTCATGGATGAGTGCTCAGATAGCGTGTGCATCACGAAC
seq0002        CACAGGGGAGGAAGTGGCGGGCTCATGGATGAGTGGTCAGATAGCGTGTGCATCAGGAAC
seq0003        CACAGGGGAGGAAGTGGCGGGCTCATGGATCAGTGGTCAGATAGCGTGTGCATCAGGAAC
seq0004        CACAGGGGAGGAAGTGGCGGGCTCATGGATGAGTGGTCAGATAGCGTGTGCATCAGGAAC
seq0005        CACAAGGGAGGAAGTGGCGGGCTCTTGGACGAGTGCTCAGATAGCGTGTGCATAACGAAC
seq0006        CACAAGGGAGGAAGTGGCGGGCTCTTGGAGGAGTGCTCAGATAGCGTGTGCATCACGAAC
seq0007        CACAAGTGAGGAAGTGGCGGGCTCTTCGACGAGTGTTCAGATAGCGTGTGCATCACGAAC
seq0008        CACAAGGGAGGAAGTAGCCGACTCTTTTATGAGTGATCAGATAGCGTGTGCAACACGAAC
seq0009        CACAAGGGAGGAAGTAGCGGACTCTTGTATAAGTGATCAGATACCCTGTGCAACGCGAAC
seq0013        C-----------------------------------------------------------
seq0014        C-----------------------------------------------------------
seq0015        C-----------------------------------------------------------
seq0018        C-----------------------------------------------------------
seq0020        CT----------------------------------------------------------

(position)     000000000000000000000000000000000000000011111111111111111111
               666666666677777777778888888888999999999900000000001111111111
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        TTCAACCTTAGATTTTATGTAACAAGGCAATCCCCGTACCGTGTCGGCGAGTCCCCGAAG
seq0001        TGCAACCTTAGAGTTTATGTAACAAGGCAATCCCCGTACCGTGTCGGCGAGTCCCCGAAG
seq0002        TGCAACCTTAGAGGTT-TGTCACAAGGCA--------ACCGTGTCGGCGAGTCCTCGAAG
seq0003        TGCAACCTTAGAGTTT-TGTCACAAGGCA--------AGCGTGTCGGCGAGTCCTCGAAG
seq0004        TGCAACCTTAGAGTTT-TGTCACAAGGCA--------AGCGTGTCGGCGAGTCCTCGAAG
seq0005        GGCA-CCTTAGATTTT-TGTAACAAGGCA--------ACAATGTCGGCGAGTTCTCGAAG
seq0006        TGCACCCTTAGATTTT-TGTAACAAGGCA--------ACAATGTCGGCGAGTTCTCGAAG
seq0007        TGCGCCCTTAGATTTT-TGTTACAAGGCA--------ACAATGTCGGCGAGTTCTCGAAG
seq0008        TGTGACCTTTAATTTT-GGTAAAAAGGCA--------TCAGTGT-TGCGGGTTCTAGACC
seq0009        TGTAACCTT------------------------------------TGCGGATCCTCGAAG
seq0013        -------------------------------------------------GGTGCTTTAAG
seq0014        -------------------------------------------------GGAACTAGAAG
seq0015        -------------------------------------------------GAGTTGTCGAA
seq0018        -----------------------------------------------------------G
seq0020        -------------------------------------------------GGTCGTCTAAG

(position)     111111
               222222
               012345
                     
seq0000        AGTTTG
seq0001        ACTTTG
seq0002        ACTTTG
seq0003        ACTTTG
seq0004        ACTTTG
seq0005        ACTTTG
seq0006        ACTTTG
seq0007        ACTTTG
seq0008        ACTTT-
seq0009        ACTTTG
seq0013        ACTGCG
seq0014        ACGTAC
seq0015        ACTTCG
seq0018        GGTCCC
seq0020        ACTTTG


<<<<< Preliminary (0): Map the residue numbers onto the reference & reconstructed MSAs... >>>>>

<<<<< Preliminary (1): Map the position shifts (from reference to reconstructed) onto the Reconstructed MSA... >>>>>

<< Output of 'map_shifts_respos_bw_2msas' >>

($shift_lf, $shift_rf) = (0, 0) .

[ Shifts in the Reconstructed MSA ]

(position)	    0    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   49

seq0000   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0001   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0002   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0003   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0004   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0005   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0006   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0007   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0008   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0009   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0013   	 -107    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0014   	 -107    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0015   	 -107    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0018   	 -107    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0020   	 -107 -107    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -



(position)	   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   97   98   99

seq0000   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0001   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0002   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    0    0    0    0    0    0    0    0    0    0    0    0    -    -    -    -    -    -    -    -    8    0    0
seq0003   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    0    0    0    0    0    0    0    0    0    0    0    0    -    -    -    -    -    -    -    -    8    0    0
seq0004   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    0    0    0    0    0    0    0    0    0    0    0    0    -    -    -    -    -    -    -    -    8    0    0
seq0005   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    1    0    0    0    0    0    0    0    0    0    0    -    0    0    0    0    0    0    0    0    0    0    0    0    -    -    -    -    -    -    -    -    8    0    0
seq0006   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    0    0    0    0    0    0    0    0    0    0    0    0    -    -    -    -    -    -    -    -    8    0    0
seq0007   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    0    0    0    0    0    0    0    0    0    0    0    0    -    -    -    -    -    -    -    -    8    0    0
seq0008   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    0    0    0    0    0    0    0    0    0    0    0    0    -    -    -    -    -    -    -    -    8    0    0
seq0009   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0013   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0014   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0015   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0018   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0020   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -



(position)	  100  101  102  103  104  105  106  107  108  109  110  111  112  113  114  115  116  117  118  119  120  121  122  123  124  125

seq0000   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0001   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0002   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0003   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0004   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0005   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0006   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0007   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0008   	    0    0    0    0    -    1    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -
seq0009   	    -    -    -    -    -   36   36    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0013   	    -    -    -    -    -    -    -    -    -    1    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0014   	    -    -    -    -    -    -    -    -    -    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0015   	    -    -    -    -    -    -    -    -    -    1    1    1    1    1    1    1    1    1    1    1    0    0    0    0    0    0
seq0018   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   11   11   11   11   11   11    0
seq0020   	    -    -    -    -    -    -    -    -    -    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0



<<<<< Preliminary (2): Put together the mapped position shifts into some Classes ... >>>>>

<< Output of 'br_list_classes_shift_respos' >>

$commoner_shift_flank = 0 .


<<<<< Preliminary (3'): For each MINI-class of shifts, parsimoniously infer the branch(es) separating the affected sequences from the rest. >>>>>

<<<<< ADDITIONAL Preliminary Process (3.5'): Split mini-classes each of which consists of unnaturally remote sequences... >>>>>

... NO CHANGES were made ...


<<<<< Preliminary (4): Merge the MINI-classes of shifts. >>>>>

<<<<< Preliminary (5'): Identify 'trivial' MINI-blocks. >>>>>

<<<<< Preliminary (6): Identify gap-pattern blocks, calculate their Dollo parsimony scenarios, and the initial parsimony candidate scenario of each gapped segment in the segmental MSAs (reference & reconstructed). >>>>>

<<<<< Preliminary (7'): Lump together some neighboring MINI-blocks affecting the identical set of sequences. >>>>>

<< Output of 'lump_together_similar_blocks': Content of @{$composite_miniblocks} (#{composite_miniblocks} = 9) >>

Indx_cmp_miniblock	beg_cmb	end_cmb	mrca	indices,constituent,miniblocks	list,position,shifts	merger,types	indices,involved,seqs

0	0	0	27	0	-107	n/a	10,11,12,13
1	0	1	28	1	-107	n/a	14
2	65	65	10	7	1	n/a	5
3	97	97	19	8	8	n/a	2,3,4,5,6,7,8
4	105	105	16	6	1	n/a	8
5	105	106	17	10	36	n/a	9
6	109	109	20	5	1	n/a	10
7	109	119	23	4	1	n/a	12
8	119	124	26	9	11	n/a	13



<<<<< Preliminary (8): Reorganize the list of insertions/deletions in the initial candidate of parsimonious scenarios, for reference and reconstructed MSAs. >>>>>

<<< (1) For Reference MSA >>>

<<< (2) For Reconstructed MSA >>>

<<<<< Preliminary (9): Identify the pairs of 'equivalent' indel events in the reference & reconstructed MSAs...  >>>>>

<<<<< (i) MAIN PROCESS (1st Round)!!!: Associate each Composite 'MINI-Block' with (an) appropriate type(s) of MSA error(s)... (#{composite blocks} = 9) >>>>>


[[ Results of the Main Process (1st Round) ]]

[ Contents of @cblk_wise_cts_invlvd_indels ]

Indx_cmp_blk	#{rlv_indels}_ref	#{rlv_indels}_rec	#{rltd_indels}_ref	#{rltd_indels}_rec	#{other_involved}_ref	#{other_involved}_rec

0	1	0	0	1	0	0
1	0	0	0	0	0	0
2	1	1	0	0	0	0
3
4	0	0	0	1	0	0
5	1	1	0	0	0	0
6	1	0	1	0	0	0
7	1	0	0	0	0	0
8	1	1	0	0	0	0


[ Skipped Composite-Blocks (#{cblocks} = 2): 1, 3 . ]


[ Contents of @cblk_wise_msa_errors ]

Indx_cmp_blk	Indx_error	len_cblk_ref	len_cblk_rec	Type	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(ref)	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(rec)

0	0	1	1	Complex(???)	19:0:106:-	24:1:1:X
1	Skipped!!(NO_ASSOCIATED_EVENT(???))
2	0	1	1	Shift	10:65:65:X	10:64:64:X
3	Skipped!!(MULTIPLE_RELEVANT_BRANCHES(#{branches}=2))
4	0	1	1	NO_ASSOCIATED_EVENT(???)	None	17:69:103:X
5	0	2	2	Shift	17:71:106:X	17:69:103:X
6	0	1	1	Complex(???)	20:109:109:X/21:108:108:X	None
7	0	11	11	Complex(???)	23:119:119:X	None
8	0	6	6	Shift	26:114:124:X	26:1:118:X


[ Contents of %indel_ref2assoc_cblks ]

Br:beg:end(ref)	indices,of,associated,composite-blocks

19:0:106	0
10:65:65	2
17:71:106	5
3:76:76	{Equivalent to '3:76:76'(rec)}
3:90:97	None
15:105:105	None
21:108:108	6
20:109:109	6
26:114:124	8
23:119:119	7
16:125:125	{Equivalent to '16:125:125'(rec)}


[ Contents of %indel_rec2assoc_cblks ]

Br:beg:end(rec)	indices,of,associated,composite-blocks

26:1:118	8
24:1:1	0
19:2:108	None
10:64:64	2
17:69:103	4,5
3:76:76	{Equivalent to '3:76:76'(ref)}
3:89:96	None
15:104:104	None
16:125:125	{Equivalent to '16:125:125'(ref)}


<<<< (ii) MAIN PROCESS (2nd Round)!!: Attempt to 'hard-link' skipped composite 'MINI-Block's to non-skipped ones, and to resolve Composite 'MINI-Block's associated with 'Complex' errors... >>>>

[[ Interim Results ]]

[ Contents of %cb2hard_linked (#{keys} = 0) ]

Indx_cmp_blk	=> [indices,cblks,hard,linked,by,the,key]



[ Contents of %cb2hard_linking (#{keys} = 0) ]

Indx_cmp_blk	=> [indices,cblks,hard,linking,the,key]



[ 'Soft-linked' pairs of composite-blocks (#{pairs} = 0) ]

Indx_cblk_A	indx_cblk_B



[[ Results of the Main Process (2nd Round) ]]

