<<<<< Input Tree (Top_node = 29) >>>>>

( seq0020{28}:0.1529, ( seq0018{26}:0.1741, ( ( seq0015{23}:0.1492, ( seq0013{20}:0.1827, seq0014{21}:0.1659 ){22}:0.0049 ){24}:0.0297, ( ( seq0008{16}:0.0865, seq0009{17}:0.1286 ){18}:0.0335, ( ( seq0005{10}:0.0368, ( seq0006{11}:0.0286, seq0007{12}:0.0362 ){13}:0.0065 ){14}:0.0368, ( ( seq0000{1}:0.0054, seq0001{2}:0.0081 ){3}:0.0232, ( seq0002{4}:0.0189, ( seq0003{5}:0.0124, seq0004{6}:0.0108 ){7}:0.0070 ){8}:0.0270 ){9}:0.0205 ){15}:0.0703 ){19}:0.0383 ){25}:0.0314 ){27}:0.0130 ){29};


<<<<< Input MSA >>>>>

#{Sequences} = 15 .
#{Sites in the segment}_ref = 71 ,
#{Sites in the segment}_rec = 68 .


<< Correspondence between sequence IDs and sequence indices >>

Indx:	Seq_ID

0:	seq0000
1:	seq0001
2:	seq0002
3:	seq0003
4:	seq0004
5:	seq0005
6:	seq0006
7:	seq0007
8:	seq0008
9:	seq0009
10:	seq0013
11:	seq0014
12:	seq0015
13:	seq0018
14:	seq0020


<< Original Segment of the Reference Alignment: >>

(position)     000000000011111111112222222222333333333344444444445555555555
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        T----AACATGTGGAACCATCAAAGTGT--T--CACCCG--TGTGGTCTAGAAATGATTA
seq0001        T----AACATGTGGAACCATCAAAGTGT--T--CACCCG--TGTGGTCTAGAAATGATTA
seq0002        T----AACACGTGAAACCATCAAAGTGT--T--CACCCGCTTGTGGTCTAAAAATGATTA
seq0003        T----AACACGTGGAACTATCAAAA-----T--CACCCGCTTGTGGTCTAAAAATGATTA
seq0004        T----AACACGTGGAACCATCAAAATGT--T--CACCCGCTTGTGCTCTAAAATTGATTA
seq0005        C----AACACGTGGAACCATCAAAGTGTTAA--CACCCG--TGTGGAGTTAA--------
seq0006        T----AACACGTGGAACCATCAAAGTGTTAA--CACTCG--TGTGGGGTTAA--------
seq0007        T----AACACGTGGAACCATCAAAGTGTTAA--CACCCG--TGTGGTGTTAA--------
seq0008        T---------------CCAC-TAAGTGTTAACCCACCCG--TGTGGTCTTAAAATGATTA
seq0009        TAATC-----------CATCCTACCTGTTAG--CACCTG--TGTGGTTTTAAAGTGATTA
seq0013        T---------------C-------------------------------------------
seq0014        T---------------C-------------------------------------------
seq0015        T---------------C-------------------------------------------
seq0018        T---------------C-------------------------------------------
seq0020        C---------------C-------------------------------------------

(position)     66666666667
               01234567890
                          
seq0000        ACGGACATCGC
seq0001        CCGGACATCGC
seq0002        ACGGACGTCGC
seq0003        ACGGACGTCGT
seq0004        ACGGACGTCGC
seq0005        -----------
seq0006        -----------
seq0007        -----------
seq0008        ACGAACATCGC
seq0009        ACGGACATCGC
seq0013        ----------C
seq0014        ----------C
seq0015        ----------C
seq0018        ----------C
seq0020        ----------C


<< Original Segment of the Reconstructed Alignment: >>

(position)     000000000011111111112222222222333333333344444444445555555555
               012345678901234567890123456789012345678901234567890123456789
                                                                           
seq0000        TAACATGTGGAACCAT-CAAAGTGTT----CACCCG--TGTGGTCTAGAAATGATTAACG
seq0001        TAACATGTGGAACCAT-CAAAGTGTT----CACCCG--TGTGGTCTAGAAATGATTACCG
seq0002        TAACACGTGAAACCAT-CAAAGTGTT----CACCCGCTTGTGGTCTAAAAATGATTAACG
seq0003        TAACACGTGGAACTAT-CAAAA---T----CACCCGCTTGTGGTCTAAAAATGATTAACG
seq0004        TAACACGTGGAACCAT-CAAAATGTT----CACCCGCTTGTGCTCTAAAATTGATTAACG
seq0005        CAACACGTGGAACCAT-CAAAGTGTTA--ACACCCG--TGTGGAGTTAA-----------
seq0006        TAACACGTGGAACCAT-CAAAGTGTTA--ACACTCG--TGTGGGGTTAA-----------
seq0007        TAACACGTGGAACCAT-CAAAGTGTTA--ACACCCG--TGTGGTGTTAA-----------
seq0008        -----------TCCA--CTAAGTGTTAACCCACCCG--TGTGGTCTTAAAATGATTAACG
seq0009        TA--------ATCCATCCTACCTGTTA--GCACCTG--TGTGGTTTTAAAGTGATTAACG
seq0013        TC----------------------------------------------------------
seq0014        TC----------------------------------------------------------
seq0015        TC----------------------------------------------------------
seq0018        TC----------------------------------------------------------
seq0020        CC----------------------------------------------------------

(position)     66666666
               01234567
                       
seq0000        GACATCGC
seq0001        GACATCGC
seq0002        GACGTCGC
seq0003        GACGTCGT
seq0004        GACGTCGC
seq0005        --------
seq0006        --------
seq0007        --------
seq0008        AACATCGC
seq0009        GACATCGC
seq0013        -------C
seq0014        -------C
seq0015        -------C
seq0018        -------C
seq0020        -------C


<<<<< Preliminary (0): Map the residue numbers onto the reference & reconstructed MSAs... >>>>>

<<<<< Preliminary (1): Map the position shifts (from reference to reconstructed) onto the Reconstructed MSA... >>>>>

<< Output of 'map_shifts_respos_bw_2msas' >>

($shift_lf, $shift_rf) = (0, -3) .

[ Shifts in the Reconstructed MSA ]

(position)	    0    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   49

seq0000   	    0   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4    -   -3   -3   -3   -3   -3   -3   -3   -3   -5    -    -    -    -   -3   -3   -3   -3   -3   -3    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0001   	    0   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4    -   -3   -3   -3   -3   -3   -3   -3   -3   -5    -    -    -    -   -3   -3   -3   -3   -3   -3    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0002   	    0   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4    -   -3   -3   -3   -3   -3   -3   -3   -3   -5    -    -    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0003   	    0   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4    -   -3   -3   -3   -3   -3    -    -    -   -5    -    -    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0004   	    0   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4    -   -3   -3   -3   -3   -3   -3   -3   -3   -5    -    -    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0005   	    0   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3    -    -   -1   -3   -3   -3   -3   -3   -3    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3    -
seq0006   	    0   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3    -    -   -1   -3   -3   -3   -3   -3   -3    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3    -
seq0007   	    0   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4   -4    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3    -    -   -1   -3   -3   -3   -3   -3   -3    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3    -
seq0008   	    -    -    -    -    -    -    -    -    -    -    -   11   -4   -4   -4    -    -   -2   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0009   	    0    0    -    -    -    -    -    -    -    -    8    8    8   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3    -    -   -1   -3   -3   -3   -3   -3   -3    -    -   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0013   	    0  -15    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0014   	    0  -15    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0015   	    0  -15    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0018   	    0  -15    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0020   	    0  -15    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -



(position)	   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   65   66   67

seq0000   	   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0001   	   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0002   	   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0003   	   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0004   	   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0005   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0006   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0007   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0008   	   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0009   	   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3   -3
seq0013   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -3
seq0014   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -3
seq0015   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -3
seq0018   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -3
seq0020   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -   -3




[INFORMATION] The original $commoner_shift_flank = -3. Thus, we will shift the entire reconstructed MSA ...

<< REVISED Output of 'map_shifts_respos_bw_2msas' >>

New ($shift_lf, $shift_rf) = (0, 0) .

[ New Shifts in the Reconstructed MSA ]

(position)	    0    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   49

seq0000   	    -    -    -    3   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1    -    0    0    0    0    0    0    0    0   -2    -    -    -    -    0    0    0    0    0    0    -    -    0    0    0    0    0    0    0    0    0
seq0001   	    -    -    -    3   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1    -    0    0    0    0    0    0    0    0   -2    -    -    -    -    0    0    0    0    0    0    -    -    0    0    0    0    0    0    0    0    0
seq0002   	    -    -    -    3   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1    -    0    0    0    0    0    0    0    0   -2    -    -    -    -    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0003   	    -    -    -    3   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1    -    0    0    0    0    0    -    -    -   -2    -    -    -    -    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0004   	    -    -    -    3   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1    -    0    0    0    0    0    0    0    0   -2    -    -    -    -    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0005   	    -    -    -    3   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1    -    0    0    0    0    0    0    0    0    0    0    -    -    2    0    0    0    0    0    0    -    -    0    0    0    0    0    0    0    0    0
seq0006   	    -    -    -    3   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1    -    0    0    0    0    0    0    0    0    0    0    -    -    2    0    0    0    0    0    0    -    -    0    0    0    0    0    0    0    0    0
seq0007   	    -    -    -    3   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1   -1    -    0    0    0    0    0    0    0    0    0    0    -    -    2    0    0    0    0    0    0    -    -    0    0    0    0    0    0    0    0    0
seq0008   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -   14   -1   -1   -1    -    -    1    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    -    0    0    0    0    0    0    0    0    0
seq0009   	    -    -    -    3    3    -    -    -    -    -    -    -    -   11   11   11    0    0    0    0    0    0    0    0    0    0    0    0    0    0    -    -    2    0    0    0    0    0    0    -    -    0    0    0    0    0    0    0    0    0
seq0013   	    -    -    -    3  -12    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0014   	    -    -    -    3  -12    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0015   	    -    -    -    3  -12    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0018   	    -    -    -    3  -12    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0020   	    -    -    -    3  -12    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -



(position)	   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   65   66   67   68   69   70

seq0000   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0001   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0002   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0003   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0004   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0005   	    0    0    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0006   	    0    0    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0007   	    0    0    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -
seq0008   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0009   	    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0
seq0013   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    0
seq0014   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    0
seq0015   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    0
seq0018   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    0
seq0020   	    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    -    0



<<<<< Preliminary (2): Put together the mapped position shifts into some Classes ... >>>>>

<< Output of 'br_list_classes_shift_respos' >>

$commoner_shift_flank = 0 .


<<<<< Preliminary (3'): For each MINI-class of shifts, parsimoniously infer the branch(es) separating the affected sequences from the rest. >>>>>

<<<<< ADDITIONAL Preliminary Process (3.5'): Split mini-classes each of which consists of unnaturally remote sequences... >>>>>

... NO CHANGES were made ...


<<<<< Preliminary (4): Merge the MINI-classes of shifts. >>>>>

<<<<< Preliminary (5'): Identify 'trivial' MINI-blocks. >>>>>

<<<<< Preliminary (6): Identify gap-pattern blocks, calculate their Dollo parsimony scenarios, and the initial parsimony candidate scenario of each gapped segment in the segmental MSAs (reference & reconstructed). >>>>>

<<<<< Preliminary (7'): Lump together some neighboring MINI-blocks affecting the identical set of sequences. >>>>>

<< Output of 'lump_together_similar_blocks': Content of @{$composite_miniblocks} (#{composite_miniblocks} = 9) >>

Indx_cmp_miniblock	beg_cmb	end_cmb	mrca	indices,constituent,miniblocks	list,position,shifts	merger,types	indices,involved,seqs

0	3	3	29	10	3	n/a	0,1,2,3,4,5,6,7,10,11,12,13,14
1	3	15	17	11,12	3,11	0	9
2	4	18	15	2	-1	n/a	0,1,2,3,4,5,6,7
3	4	4	29	0	-12	n/a	10,11,12,13,14
4	14	14	16	13	14	n/a	8
5	15	17	16	3	-1	n/a	8
6	20	20	16	8	1	n/a	8
7	28	28	9	1	-2	n/a	0,1,2,3,4
8	32	32	19	9	2	n/a	5,6,7,9



<<<<< Preliminary (8): Reorganize the list of insertions/deletions in the initial candidate of parsimonious scenarios, for reference and reconstructed MSAs. >>>>>

<<< (1) For Reference MSA >>>

<<< (2) For Reconstructed MSA >>>

<<<<< Preliminary (9): Identify the pairs of 'equivalent' indel events in the reference & reconstructed MSAs...  >>>>>

<<<<< (i) MAIN PROCESS (1st Round)!!!: Associate each Composite 'MINI-Block' with (an) appropriate type(s) of MSA error(s)... (#{composite blocks} = 9) >>>>>


[[ Results of the Main Process (1st Round) ]]

[ Contents of @cblk_wise_cts_invlvd_indels ]

Indx_cmp_blk	#{rlv_indels}_ref	#{rlv_indels}_rec	#{rltd_indels}_ref	#{rltd_indels}_rec	#{other_involved}_ref	#{other_involved}_rec

0	0	0	1	1	0	0
1	1	0	0	1	0	0
2	1	1	0	0	0	0
3	1	0	1	1	0	0
4	0	1	1	0	0	0
5	0	1	1	0	0	0
6	1	0	0	1	0	0
7	1	1	0	0	0	0
8


[ Skipped Composite-Blocks (#{cblocks} = 1): 8 . ]


[ Contents of @cblk_wise_msa_errors ]

Indx_cmp_blk	Indx_error	len_cblk_ref	len_cblk_rec	Type	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(ref)	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(rec)

0	0	1	1	Complex(???)	17:1:4:-	16:3:13:X
1	0	5	13	Complex(???)	17:1:4:-	16:3:13:X
2	0	15	15	Complex(???)	15:5:15:-	15:5:12:-
3	0	1	1	Complex(???)	19:17:69:-/15:5:15:-	15:5:12:-
4	0	1	1	Complex(???)	17:1:4:-	16:3:13:X
5	0	3	3	Complex(???)	17:1:4:-	16:18:18:X
6	0	1	1	Complex(???)	16:20:20:X	17:19:19:-
7	0	1	1	Shift	9:28:29:X	9:29:32:X
8	Skipped!!(MULTIPLE_RELEVANT_BRANCHES(#{branches}=2))


[ Contents of %indel_ref2assoc_cblks ]

Br:beg:end(ref)	indices,of,associated,composite-blocks

17:1:4	0,1,4,5
15:5:15	2,3
19:17:69	3
16:20:20	6
5:25:27	{Equivalent to '5:25:27'(rec)}
9:28:29	7
16:31:32	None
8:39:40	{Equivalent to '8:39:40'(rec)}
14:52:70	{Equivalent to '14:52:70'(rec)}


[ Contents of %indel_rec2assoc_cblks ]

Br:beg:end(rec)	indices,of,associated,composite-blocks

16:3:13	0,1,4
15:5:12	2,3
19:13:69	None
16:18:18	5
17:19:19	6
5:25:27	{Equivalent to '5:25:27'(ref)}
9:29:32	7
16:30:31	None
8:39:40	{Equivalent to '8:39:40'(ref)}
14:52:70	{Equivalent to '14:52:70'(ref)}


<<<< (ii) MAIN PROCESS (2nd Round)!!: Attempt to 'hard-link' skipped composite 'MINI-Block's to non-skipped ones, and to resolve Composite 'MINI-Block's associated with 'Complex' errors... >>>>

[[ Interim Results ]]

[ Contents of %cb2hard_linked (#{keys} = 1) ]

Indx_cmp_blk	=> [indices,cblks,hard,linked,by,the,key]

0	=> [1],


[ Contents of %cb2hard_linking (#{keys} = 1) ]

Indx_cmp_blk	=> [indices,cblks,hard,linking,the,key]

1	=> [0],


[ 'Soft-linked' pairs of composite-blocks (#{pairs} = 1) ]

Indx_cblk_A	indx_cblk_B

2	3


[[ Results of the Main Process (2nd Round) ]]

[ For the 1 th pair: (2, 3) ]


{ The representative path is: 2  -> 3 }


( Rough frameworks of the 1st- & 2nd-moved c-blocks )

Subject_c-block	beg_cb	end_cb	shift_le	shift_re	rlv_branch	indices,invlvd,seqs,le	indices,invlvd,seqs,re

1st(intermediate)	4	18	-1	-1	15	0,1,2,3,4,5,6,7	0,1,2,3,4,5,6,7
2nd(reconstructed)	4	4	-12	-12	19	10,11,12,13,14	10,11,12,13,14


( Errors associated with the c-blocks )

Subject_c-block	Type	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(before)	br1:beg1:end1:stat_ue1/br2:beg2:end2:stat_ue2/...(after)

1st(intermediate)	Complex(???)	15:5:15:-	15:5:12:-/19:4:15:-
2nd(reconstructed)	Complex(???)	19:4:15:-/19:17:69:-	None


