LOLIPOG: LOg-LIkelihood for the Pattern Of Gaps in multiple sequence alignment (MSA).

[New feature:
	As of October 31, 2015, the directory contains another package, ComplLiMment (Complete Likelihood for Multiple sequence alignment) as well. ]

< Table of Contents > -- as of October 8 (Sat), 2016 --

ComplLiMment_P.ver0.6.1.tgz
	A gzipped tar archive of the package, ComplLiMment_P (version 0.6.1),
	which calculates the "complete-likelihood score" of an input MSA,
	or the logarithm of the total occurrence probability of the MSA under a "complete" stochastic evolutionary model
	(describing both substitution and insertion/deletion processes).
	The package consists nearly exclusively of Perl modules and scripts.

	[NOTE: It contains different templates of Dawg control files than the latest version.
	See the change log in "readme-ComplLiMment_P.txt" for more details.]

ComplLiMment_P.ver0.6.1.5.tgz
	The latest version (ver. 0.6.1.5) of ComplLiMmment_P.

FA_LOLIPOG_P.ver0.5.1.tgz
	A gzipped tar archive of the package, FA_LOLIPOG_P (version 0.5.1),
	which calculates the first-approximate log-likelihood for the pattern of gaps,
	and which consists nearly exclusively of Perl modules and scripts.

FA_LOLIPOG_P.ver0.6.1.2.tgz
	The essentially second latest version (version 0.6.1.2) of FA_LOLIPOG_P.

FA_LOLIPOG_P.ver0.6.1.7.tgz
	The latest version (version 0.6.1.7) of FA_LOLIPOG_P.


readme-ComplLiMment_P.txt
	Description of the package, ComplLiMment_P (version 0.6.1.5).
	(It is identical to the "README.txt" file in the top directory
	that is created when extracting "ComplLiMment_P.ver0.6.1.5.tgz.")

readme-FA_LOLIPOG_P.txt
	Description of the package, FA_LOLIPOG_P (version 0.6.1.7).
	(It is identical to the "README.txt" file in the top directory
	that is created when extracting "FA_LOLIPOG_P.ver0.6.1.7.tgz.")