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## Uses of Interface
org.metaqtl.bio.IBioOntology

Packages that use IBioOntology
org.metaqtl |
org.metaqtl.algo |
org.metaqtl.bio.entity |
org.metaqtl.main |

Uses of IBioOntology in org.metaqtl

Methods in org.metaqtl with parameters of type IBioOntology
`void` | `MetaQtlData.doTraitOntologyClustering(IBioOntology ontology)` According to the given trait ontology this methods clusterize the QTL in group in such a way that each group represents a trait term in the ontology.

Uses of IBioOntology in org.metaqtl.algo

Fields in org.metaqtl.algo declared as IBioOntology
`protected IBioOntology` | `ClustAlgorithm.ontology` The optional trait ontology to use to group Qtl.

Constructors in org.metaqtl.algo with parameters of type IBioOntology
`ClustAlgorithm(IBioGenome map, IBioOntology ontology)`
`ClustAlgorithm(IBioGenome map, java.lang.String name, IBioOntology ontology)`
`QtlClustAlgorithm(IBioGenome map, IBioOntology ontology)`
`QtlClustAlgorithm(IBioGenome map, java.lang.String chrom, IBioOntology ontology)`
`QtlTreeAlgorithm(IBioGenome map, IBioOntology ontology)`

Uses of IBioOntology in org.metaqtl.bio.entity

Classes in org.metaqtl.bio.entity that implement IBioOntology
`class` | `Ontology`

Uses of IBioOntology in org.metaqtl.main

Methods in org.metaqtl.main that return IBioOntology
`protected static IBioOntology` | `MetaMain.getOntology(java.lang.String ontoF, char format)`

Methods in org.metaqtl.main with parameters of type IBioOntology
`static ChromGraph[]` | `MetaMain.getChromGraph(Chromosome[] chroms, boolean withQtl, int modeQtl, IBioOntology ontology, MetaQtlAnalysis treeAnalysis)`
`static QtlPartition` | `MetaMain.getQtlPartition(Chromosome chromosome, IBioOntology ontology)`

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