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## Q

Qtl - Class in org.metaqtl
  A QTL (Quantitative Trait Loci)
Qtl() - Constructor for class org.metaqtl.Qtl
QTL - Class in org.thalia.bio.entity
  Class Description Here
QTL() - Constructor for class org.thalia.bio.entity.QTL
QTL(String, IBioEntity) - Constructor for class org.thalia.bio.entity.QTL
QTL - Static variable in interface org.thalia.bio.IBioLocus
Qtl.QTLCross - Class in org.metaqtl
  This class stores the informations on the cross design used to detect the QTL.
Qtl.QTLCross() - Constructor for class org.metaqtl.Qtl.QTLCross
Qtl.QTLProj - Class in org.metaqtl
  This class stores the QTL projection properties.
Qtl.QTLProj() - Constructor for class org.metaqtl.Qtl.QTLProj
Qtl.QTLStats - Class in org.metaqtl
  This class stores the usual statistics for the QTL.
Qtl.QTLStats() - Constructor for class org.metaqtl.Qtl.QTLStats
Qtl.QTLSupport - Class in org.metaqtl
  This class stores information on the QTL Confidence Interval
Qtl.QTLSupport() - Constructor for class org.metaqtl.Qtl.QTLSupport
Qtl.QTLTrait - Class in org.metaqtl
  This class stores the trait description of a QTL
Qtl.QTLTrait() - Constructor for class org.metaqtl.Qtl.QTLTrait
QTL_CI_FROM - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL confidence interval lower boundary.
QTL_CI_LOD_DECREASE - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL confidence interval LOD decrease.
QTL_CI_TO - Static variable in interface org.metaqtl.IBioLocusProperties
  THe key for the QTL confidence interval upper boundary.
QTL_CI_WIDTH - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_CI_WIDTH_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_CROSS_NAME - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL cross name.
QTL_CROSS_SIZE - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL cross size.
QTL_CROSS_TYPE - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL cross type.
QTL_HSPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
  The horizontal space between Qtl shapes.
QTL_NAME_COLOR - Static variable in class org.metaqtl.graph.MetaGraphPar
  The color of the QTL names.
QTL_NAME_FONT - Static variable in class org.metaqtl.graph.MetaGraphPar
  The font used for the Qtl names.
QTL_NAME_SPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_NAME_VSPACE_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
  The space magnification between the Qtl name and the Qtl confidence interval.
QTL_PALETTE - Static variable in class org.metaqtl.graph.MetaGraphPar
  The color palete for the QTL partition.
QTL_PCH_SIZE - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_POS_HEIGHT_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_POS_WIDTH_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_PROB_WIDTH - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_PROJ_INTSCALE - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL flanking marker interval projection rate.
QTL_PROJ_MAPSCALE - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL confidence interval projection rate.
QTL_PROJ_ORIGIN - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the map of origin of the QTL.
QTL_PROJ_SHAREFLANKING - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL flanking marker interval order preservation.
QTL_PROJ_SWAPFLANKING - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL flanking marker interval reverse order.
QTL_STATS_ADDITIVE - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL additive effect.
QTL_STATS_DOMINANCE - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL dominance effect.
QTL_STATS_RSQUARE - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL rsquare.
QTL_TICK_WIDTH_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
  The magnification for the tick of the QTL.
QTL_TRAIT_GROUP - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL trait group.
QTL_TRAIT_NAME - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL trait name.
QTL_TRAIT_UNIT - Static variable in interface org.metaqtl.IBioLocusProperties
  The key for the QTL trait unit.
QTL_TREE_SCALE - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_TREE_SPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
QTL_VSPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
  The vertical space between Qtl shapes.
QtlAdapter - Class in org.metaqtl.adapter
  This class defines some usefull methods to adapt `Qtl` object into other kinds of objects or the inverse.
QtlAdapter() - Constructor for class org.metaqtl.adapter.QtlAdapter
qtlByChrom - Variable in class org.metaqtl.MetaQtlAnalysis
  The matrix of qtl by chromosome
qtlCI - Variable in class org.metaqtl.QtlPartition
  The Qtl confidence intervals.
QTLClust - Class in org.metaqtl.main
QTLClust() - Constructor for class org.metaqtl.main.QTLClust
QtlClustAlgorithm - Class in org.metaqtl.algo
  This class defines methods to perform a QTL meta-analysis on a genetic map by applying a clustering of QTL based on a gaussian mixture model and the EM-algorihtm.
QtlClustAlgorithm(IBioGenome, IBioOntology) - Constructor for class org.metaqtl.algo.QtlClustAlgorithm
QtlClustAlgorithm(IBioGenome, String, IBioOntology) - Constructor for class org.metaqtl.algo.QtlClustAlgorithm
QTLClustInfo - Class in org.metaqtl.main
QTLClustInfo() - Constructor for class org.metaqtl.main.QTLClustInfo
qtlIdx - Variable in class org.metaqtl.MetaQtlResult
  The indices of QTL which are implied in the analysis.
QtlLayer - Class in org.metaqtl.graph
QtlLayer(double, double) - Constructor for class org.metaqtl.graph.QtlLayer
QtlLayerBuffer - Class in org.metaqtl.graph
QtlLayerBuffer() - Constructor for class org.metaqtl.graph.QtlLayerBuffer
QTLLOCUS - Static variable in interface org.thalia.bio.IBioEntityTypes
QTLModel - Class in org.metaqtl.main
QTLModel() - Constructor for class org.metaqtl.main.QTLModel
qtlNames - Variable in class org.metaqtl.QtlPartition
  The qtl names
qtlPart - Variable in class org.metaqtl.graph.ChromGraph
  The Qtl partition
QtlPartition - Class in org.metaqtl
QtlPartition() - Constructor for class org.metaqtl.QtlPartition
QtlPartitionAdapter - Class in org.metaqtl.adapter
  This class defines some methods to adapt complient objects into a `QtlPartition` object.
QtlPartitionAdapter() - Constructor for class org.metaqtl.adapter.QtlPartitionAdapter
QtlPartitionLayer - Class in org.metaqtl.graph
QtlPartitionLayer(double, double) - Constructor for class org.metaqtl.graph.QtlPartitionLayer
qtlPos - Variable in class org.metaqtl.QtlPartition
  The Qtl positions
QTLProj - Class in org.metaqtl.main
QTLProj() - Constructor for class org.metaqtl.main.QTLProj
QtlProjAlgorithm - Class in org.metaqtl.algo
  This class defines some methods to project QTL positions from a genetic map to another.
QtlProjAlgorithm(IBioGenome[], IBioGenome, IBioLocus[]) - Constructor for class org.metaqtl.algo.QtlProjAlgorithm
  Creates a new instance of `QtlProjAlgorithm` for the given configuration of projection.
qtls - Variable in class org.metaqtl.Chromosome
  The QTLs located on this chromosome.
QtlShape - Class in org.metaqtl.graph
QtlShape() - Constructor for class org.metaqtl.graph.QtlShape
qtlShapes - Variable in class org.metaqtl.graph.QtlLayer
  The Qtl shapes.
QTLTree - Class in org.metaqtl.main
QTLTree() - Constructor for class org.metaqtl.main.QTLTree
QtlTreeAlgorithm - Class in org.metaqtl.algo
  This class defines methods to perform agglomerative hierarchical QTL clustering.
QtlTreeAlgorithm(IBioGenome, IBioOntology) - Constructor for class org.metaqtl.algo.QtlTreeAlgorithm
QtlTreeLayer - Class in org.metaqtl.graph
QtlTreeLayer(double, double) - Constructor for class org.metaqtl.graph.QtlTreeLayer
QtlUnit - Class in org.metaqtl.graph
QtlUnit() - Constructor for class org.metaqtl.graph.QtlUnit

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