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## Uses of Interface
org.thalia.bio.IBioLocus

Packages that use IBioLocus
org.metaqtl |
org.metaqtl.adapter |
org.metaqtl.algo |
org.metaqtl.factory |
org.metaqtl.main |
org.metaqtl.util |
org.thalia.bio |
org.thalia.bio.entity |
org.thalia.bio.util |

Uses of IBioLocus in org.metaqtl

Methods in org.metaqtl with parameters of type IBioLocus
`void` | `Chromosome.attachQTL(IBioLocus[] qtls)` Add
`boolean` | `ChromCluster.isDubiousLocus(IBioLocus locus)` If a list of dubious markers has been set before then this routine checks if the given locus is not included into this list.
`void` | `ChromCluster.setDubiousMarker(IBioLocus[] dubious)` This method sets the list of dubious marker.
`void` | `MapCluster.setDubiousMarker(IBioLocus[] dubious)` This method sets the list of dubious marker.

Uses of IBioLocus in org.metaqtl.adapter

Methods in org.metaqtl.adapter that return IBioLocus
`static IBioLocus` | `QtlAdapter.fromQTL(Qtl qtl)` This method converts a `Qtl` into an object which class implements the `IBioLocus`interface.``

Methods in org.metaqtl.adapter with parameters of type IBioLocus
`static Qtl` | `QtlAdapter.toQTL(IBioLocus locus)` This method converts an object which class implements the `IBioLocus`interface into a `Qtl`.``

Uses of IBioLocus in org.metaqtl.algo

Constructors in org.metaqtl.algo with parameters of type IBioLocus
`MetaMapAlgorithm(IBioGenome[] maps, IBioGenome skeleton, IBioLocus[] dubious, MetaDico mrkDico)`
`QtlProjAlgorithm(IBioGenome[] maps, IBioGenome skeleton, IBioLocus[] dubious)` Creates a new instance of `QtlProjAlgorithm` for the given configuration of projection.

Uses of IBioLocus in org.metaqtl.factory

Methods in org.metaqtl.factory that return IBioLocus
`static IBioLocus[]` | `DubiousLocusFactory.read(java.io.Reader reader)` This routine reads the list of dubious markers from the given file location and returns if succeed an array of `IBioLocus` objects.

Uses of IBioLocus in org.metaqtl.main

Methods in org.metaqtl.main that return IBioLocus
`protected static IBioLocus[]` | `MetaMain.getDubious(java.lang.String dubFile)`

Uses of IBioLocus in org.metaqtl.util

Methods in org.metaqtl.util with parameters of type IBioLocus
`static int` | `LocusProperties.getMetaOccurence(IBioLocus locus)`
`static boolean` | `LocusProperties.isDubiousOrderLocus(IBioLocus locus)` Returns true if the given locus has a property order.dubious set to one, false otherwise

Uses of IBioLocus in org.thalia.bio

Methods in org.thalia.bio that return IBioLocus
`IBioLocus` | `IBioAllele.getLocus()`
`IBioLocus` | `IBioLGroup.getLocus(java.lang.String name)`
`IBioLocus[]` | `IBioLGroup.loci()`

Methods in org.thalia.bio with parameters of type IBioLocus
`void` | `IBioLGroup.addLocus(IBioLocus locus)`
`void` | `IBioLGroup.setLoci(IBioLocus[] loci)`
`void` | `IBioAllele.setLocus(IBioLocus locus)`

Uses of IBioLocus in org.thalia.bio.entity

Classes in org.thalia.bio.entity that implement IBioLocus
`class` | `AlleleContainer` Class Description Here
`class` | `Locus`
`class` | `Marker` Class Description Here
`class` | `QTL` Class Description Here

Fields in org.thalia.bio.entity declared as IBioLocus
`static IBioLocus[]` | `IBioConstants.EMPTY_BIOLOCUS_ARRAY`

Methods in org.thalia.bio.entity that return IBioLocus
`IBioLocus` | `LocusContainer.getLocus(java.lang.String name)`
`IBioLocus[]` | `LocusContainer.loci()`

Methods in org.thalia.bio.entity with parameters of type IBioLocus
`void` | `LocusContainer.addLocus(IBioLocus locus)`
`void` | `LocusContainer.setLoci(IBioLocus[] loci)`

Uses of IBioLocus in org.thalia.bio.util

Methods in org.thalia.bio.util that return IBioLocus
`static IBioLocus[]` | `BioLocusTypes.extractLocus(IBioLocus[] loci, int type)` This returns extracts in the given array of loci the locus which type matches the given one.
`static IBioLocus[]` | `BioUtilities.sortLociByPosition(IBioLocus[] loci)` Sort tab with loci

Methods in org.thalia.bio.util with parameters of type IBioLocus
`static IBioLocus[]` | `BioLocusTypes.extractLocus(IBioLocus[] loci, int type)` This returns extracts in the given array of loci the locus which type matches the given one.
`static IBioLocus[]` | `BioUtilities.sortLociByPosition(IBioLocus[] loci)` Sort tab with loci

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