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## org.metaqtl.algo
Class CMSAlgorithm

    java.lang.Object
      org.metaqtl.algo.CMSAlgorithm

    public final class CMSAlgorithm

extends java.lang.Object

Use this class to find common marker sequences between two chromosomes.

See Also:
  `Chromosome`, `CMarkerSequence`

Constructor Summary
`CMSAlgorithm()`

Method Summary
`static CMarkerSequence` | `run(Chromosome chrom1, Chromosome chrom2)` This methods find the common marker sequences between the two given chromosomes.

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### CMSAlgorithm

    public CMSAlgorithm()

Method Detail

### run

    public static CMarkerSequence run(Chromosome chrom1,
                                      Chromosome chrom2)

  This methods find the common marker sequences between the two given chromosomes.

  Parameters:
    `chrom1` - the first `Chromosome`.
    `chrom2` - the second `Chromosome`.
  Returns:
    a `CMarkerSequence`

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