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## W

wantsValue() - Method in class org.metaqtl.main.CmdLineParser.Option
  Tells whether or not this option wants a value
WARD_METHOD - Static variable in class org.metaqtl.algo.HClustAlgorithm
  Ward method
WardMethod(double[], double[]) - Static method in class org.metaqtl.algo.HClustAlgorithm
  This method performs a hierarchical clustering of the given data points using the Ward's method.
WIDTH - Static variable in class org.metaqtl.graph.GraphFactory
WITH_CHROM_NAME - Static variable in class org.metaqtl.graph.MetaGraphPar
WITH_COMMON_MARKER - Static variable in class org.metaqtl.graph.MetaGraphPar
WITH_LEGEND - Static variable in class org.metaqtl.graph.MetaGraphPar
WITH_MAP_NAME - Static variable in class org.metaqtl.graph.MetaGraphPar
WITH_MARKER_NAME - Static variable in class org.metaqtl.graph.MetaGraphPar
WITH_MARKER_POSITION - Static variable in class org.metaqtl.graph.MetaGraphPar
WITH_QTL_NAME - Static variable in class org.metaqtl.graph.MetaGraphPar
  Add the Qtl name.
write(EMResult, OutputStream) - Static method in class org.metaqtl.factory.EMResultFactory
write(EMResult, PrintWriter) - Static method in class org.metaqtl.factory.EMResultFactory
write(OutputStream) - Static method in class org.metaqtl.factory.MetaGraphParFactory
write(Writer) - Static method in class org.metaqtl.factory.MetaGraphParFactory
write(MetaMap, OutputStream) - Static method in class org.metaqtl.factory.MetaMapSummaryFactory
  This methods writes out the summary for a consensus genetic map into a given output stream `stream`.
write(MetaQtlAnalysis, OutputStream) - Static method in class org.metaqtl.factory.MetaQtlAnalysisFactory
  This methods writes out in the given `stream` the results of a QTL meta-analysis.
write(MetaQtlAnalysis, OutputStream) - Static method in class org.metaqtl.factory.MetaQtlAnalysisModelFactory
write(MetaQtlAnalysis, Writer) - Static method in class org.metaqtl.factory.MetaQtlAnalysisModelFactory
write(MetaQtlAnalysis, OutputStream) - Static method in class org.metaqtl.factory.MetaQtlAnalysisSummaryFactory
  This method writes out the summary for a givene QTL meta-analysis result `analysis` on the given output stream `stream`.
write(MetaQtlModel, OutputStream) - Static method in class org.metaqtl.factory.MetaQtlModelFactory
write(MetaQtlModel, Writer) - Static method in class org.metaqtl.factory.MetaQtlModelFactory
write(Tree, OutputStream) - Static method in class org.metaqtl.factory.TreeFactory
  This method writes out the given tree `nodes` as an array of `TreeNode` on the given output stream stream.
write(Tree, PrintWriter) - Static method in class org.metaqtl.factory.TreeFactory
  This method writes out the given tree `nodes` as an array of `TreeNode` using the given writer writer.
writeImg(ChromGraph[], File, String) - Static method in class org.metaqtl.main.MetaMain
writePar(File) - Static method in class org.metaqtl.main.MetaMain

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