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## E

E - Variable in class org.metaqtl.util.OffspringManager.HaldaneWaddingtonProportion
E_coeff - Static variable in class org.metaqtl.util.OffspringManager.HaldaneWaddingtonProportion
edist - Variable in class org.metaqtl.EMResult
  The euclidean distance between the current and the previous vector of parameters (mu + pi)
EM_CONTINUE - Static variable in class org.metaqtl.algo.EMAlgorithm
  The EM convergence status : continue
EM_ERR - Static variable in class org.metaqtl.algo.EMAlgorithm
  The EM convergence tolerance.
EM_FAILURE - Static variable in class org.metaqtl.algo.EMAlgorithm
  The EM convergence status : failure
EM_ITER_MAX - Static variable in class org.metaqtl.algo.EMAlgorithm
  The EM maximum number of iterations.
EM_MIN_DISTANCE - Static variable in class org.metaqtl.algo.EMAlgorithm
  The minimal mahalanobis distance between components.
EM_OK - Static variable in class org.metaqtl.algo.EMAlgorithm
  The EM convergence status : success
EM_START - Static variable in class org.metaqtl.algo.EMAlgorithm
  The number of replicates for a run of the EM-algorithm.
EMAlgorithm - Class in org.metaqtl.algo
  This class defines methods to perform the EM-algorithm for univariate mixture of gaussians with known variances.
EMAlgorithm() - Constructor for class org.metaqtl.algo.EMAlgorithm
EMCriteria - Class in org.metaqtl
EMCriteria() - Constructor for class org.metaqtl.EMCriteria
EMPTY_BIOALLELE_ARRAY - Static variable in interface org.thalia.bio.entity.IBioConstants
EMPTY_BIOENTITY_ARRAY - Static variable in interface org.thalia.bio.entity.IBioConstants
EMPTY_BIOLGROUP_ARRAY - Static variable in interface org.thalia.bio.entity.IBioConstants
EMPTY_BIOLOCUS_ARRAY - Static variable in interface org.thalia.bio.entity.IBioConstants
emRate(EMResult, double[], double[]) - Static method in class org.metaqtl.algo.EMAlgorithm
  Compute the euclidean distance between the new parameters and the old ones to obtain a simple approximation of the EM convergence rate.
EMResult - Class in org.metaqtl
EMResult() - Constructor for class org.metaqtl.EMResult
EMResult(int, int) - Constructor for class org.metaqtl.EMResult
EMResultFactory - Class in org.metaqtl.factory
EMResultFactory() - Constructor for class org.metaqtl.factory.EMResultFactory
entities - Variable in class org.thalia.bio.entity.bean.BioEntityCollectionBean
eStep(double[], double[], EMResult) - Static method in class org.metaqtl.algo.EMAlgorithm
  The Expectation step : it just consists in updating the Z matrix, i.e the cluster membership probabilities.
ESTIMATED - Static variable in interface org.thalia.bio.util.ILGroupPosition
EstimatedLocusPosition - Class in org.thalia.bio.util
  Class Description Here
EstimatedLocusPosition(double, double) - Constructor for class org.thalia.bio.util.EstimatedLocusPosition
extractLocus(IBioLocus[], int) - Static method in class org.thalia.bio.util.BioLocusTypes
  This returns extracts in the given array of loci the locus which type matches the given one.

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