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## Uses of Interface
org.metaqtl.bio.IBioEntity

Packages that use IBioEntity
org.metaqtl.bio |
org.metaqtl.bio.entity |
org.metaqtl.bio.entity.adapter |
org.metaqtl.bio.entity.factory |

Uses of IBioEntity in org.metaqtl.bio

Subinterfaces of IBioEntity in org.metaqtl.bio
`interface` | `IBioAllele` Class Description Here
`interface` | `IBioCross` Class Description Here
`interface` | `IBioGenome`
`interface` | `IBioIndividual` Class Description Here
`interface` | `IBioLGroup`
`interface` | `IBioLocus`
`interface` | `IBioOntology` This interface defines some rules to handle a ontology.
`interface` | `IBioOntologyTerm` This class defines a term of an ontology.
`interface` | `IBioPopulation` Class Description Here

Methods in org.metaqtl.bio that return IBioEntity
`IBioEntity` | `IBioEntity.getParent()` Returns the entity that handles this entity.
`IBioEntity` | `IBioAdapter.toEntity(java.lang.Object obj)` Convert the given bio entity object into another compliant object.

Methods in org.metaqtl.bio with parameters of type IBioEntity
`java.lang.Object` | `IBioAdapter.fromEntity(IBioEntity obj)` Convert the given compliant object to a bio entity object.

Uses of IBioEntity in org.metaqtl.bio.entity

Classes in org.metaqtl.bio.entity that implement IBioEntity
`class` | `AlleleContainer` Class Description Here
`class` | `BioEntity` Class Description Here
`class` | `BioEntityCollection` Class Description Here
`class` | `BioEntityContainer` Class Description Here
`class` | `CrossPopulation` Class Description Here
`class` | `GeneticMap` Class Description Here
`class` | `GroupContainer` Class Description Here
`class` | `Individual` Class Description Here
`class` | `IndividualContainer` Class Description Here
`class` | `LGroup` Class Description Here
`class` | `Locus`
`class` | `LocusContainer` Class Description Here
`class` | `Marker` Class Description Here
`class` | `Ontology`
`class` | `OntologyTerm`
`class` | `Population` Class Description Here
`class` | `QTL` Class Description Here

Fields in org.metaqtl.bio.entity declared as IBioEntity
`protected IBioEntity` | `BioEntity.parent`
`protected IBioEntity` | `BioEntityCollection.parent`

Methods in org.metaqtl.bio.entity that return IBioEntity
`protected IBioEntity[]` | `BioEntityContainer.entities()`
`protected IBioEntity` | `BioEntityContainer.getEntity(java.lang.String name)`
`IBioEntity` | `BioEntity.getParent()`
`IBioEntity` | `BioEntityCollection.getParent()`
`static IBioEntity` | `BioEntity.newBioEntity(int type)`

Methods in org.metaqtl.bio.entity with parameters of type IBioEntity
`protected void` | `BioEntityContainer.addEntity(IBioEntity entity)`
`static Population` | `Population.newCrossPopulation(int type, java.lang.String name, IBioEntity parent)`

Constructors in org.metaqtl.bio.entity with parameters of type IBioEntity
`AlleleContainer(java.lang.String name, IBioEntity parent)`
`BioEntity(java.lang.String name, IBioEntity parent)`
`BioEntityContainer(java.lang.String name, IBioEntity parent)`
`CrossPopulation(java.lang.String name, IBioEntity parent)`
`CrossPopulation(java.lang.String name, IBioEntity parent, int type)`
`GeneticMap(java.lang.String name, IBioEntity parent)`
`GroupContainer(java.lang.String name, IBioEntity parent)`
`Individual(java.lang.String name, IBioEntity parent)`
`IndividualContainer(java.lang.String name, IBioEntity parent)`
`LGroup(java.lang.String name, IBioEntity parent)`
`Locus(java.lang.String name, IBioEntity parent)`
`LocusContainer(java.lang.String name, IBioEntity parent)`
`Marker(java.lang.String name, IBioEntity parent)`
`Population(java.lang.String name, IBioEntity parent)`
`QTL(java.lang.String name, IBioEntity parent)`

Uses of IBioEntity in org.metaqtl.bio.entity.adapter

Methods in org.metaqtl.bio.entity.adapter that return IBioEntity
`IBioEntity` | `BioEntityCollectionAdapter.toEntity(java.lang.Object bean)`
`IBioEntity` | `GeneticMapBeanAdapter.toEntity(java.lang.Object bean)`
`IBioEntity` | `LGroupBeanAdapter.toEntity(java.lang.Object bean)`
`IBioEntity` | `LocusBeanAdapter.toEntity(java.lang.Object bean)`
`IBioEntity` | `OntologyBeanAdapter.toEntity(java.lang.Object obj)`
`IBioEntity` | `OntologyTermBeanAdapter.toEntity(java.lang.Object obj)`

Methods in org.metaqtl.bio.entity.adapter with parameters of type IBioEntity
`java.lang.Object` | `BioEntityCollectionAdapter.fromEntity(IBioEntity obj)`
`java.lang.Object` | `GeneticMapBeanAdapter.fromEntity(IBioEntity obj)`
`java.lang.Object` | `LGroupBeanAdapter.fromEntity(IBioEntity obj)`
`java.lang.Object` | `LocusBeanAdapter.fromEntity(IBioEntity obj)`
`java.lang.Object` | `OntologyBeanAdapter.fromEntity(IBioEntity obj)`
`java.lang.Object` | `OntologyTermBeanAdapter.fromEntity(IBioEntity obj)`
`static void` | `BioEntityAdapter.fromEntity(IBioEntity entity, BioEntityBean bean)`
`static void` | `BioEntityAdapter.toEntity(BioEntityBean bean, IBioEntity entity)`

Uses of IBioEntity in org.metaqtl.bio.entity.factory

Methods in org.metaqtl.bio.entity.factory that return IBioEntity
`abstract IBioEntity` | `BioEntityFactory.load(java.io.InputStream stream)`
`IBioEntity` | `MapChartFactory.load(java.io.InputStream stream)` TODO (non-Javadoc)
`IBioEntity` | `MapMakerFactory.load(java.io.InputStream stream)`
`IBioEntity` | `MapRawFactory.load(java.io.InputStream inputStream)`
`IBioEntity` | `MapTabFactory.load(java.io.InputStream stream)`
`IBioEntity` | `OntologyTabFactory.load(java.io.InputStream inputStream)`
`IBioEntity` | `XmlBioEntityFactory.load(java.io.InputStream stream)`
`abstract IBioEntity` | `BioEntityFactory.load(java.io.Reader reader)`
`IBioEntity` | `MapChartFactory.load(java.io.Reader reader)` TODO (non-Javadoc)
`IBioEntity` | `MapMakerFactory.load(java.io.Reader reader)`
`IBioEntity` | `MapRawFactory.load(java.io.Reader reader)`
`IBioEntity` | `MapTabFactory.load(java.io.Reader reader)`
`IBioEntity` | `OntologyTabFactory.load(java.io.Reader reader)` Term_id : the term identifient.
`IBioEntity` | `XmlBioEntityFactory.load(java.io.Reader reader)`

Methods in org.metaqtl.bio.entity.factory with parameters of type IBioEntity
`abstract void` | `BioEntityFactory.unload(IBioEntity entity, java.io.OutputStream stream)`
`void` | `MapChartFactory.unload(IBioEntity obj, java.io.OutputStream stream)` TODO (non-Javadoc)
`void` | `MapMakerFactory.unload(IBioEntity entity, java.io.OutputStream stream)`
`void` | `MapRawFactory.unload(IBioEntity entity, java.io.OutputStream stream)`
`void` | `MapTabFactory.unload(IBioEntity entity, java.io.OutputStream stream)`
`void` | `OntologyTabFactory.unload(IBioEntity entity, java.io.OutputStream stream)`
`void` | `XmlBioEntityFactory.unload(IBioEntity obj, java.io.OutputStream stream)`
`abstract void` | `BioEntityFactory.unload(IBioEntity entity, java.io.Writer writer)`
`void` | `MapChartFactory.unload(IBioEntity obj, java.io.Writer w)` TODO (non-Javadoc)
`void` | `MapMakerFactory.unload(IBioEntity obj, java.io.Writer w)`
`void` | `MapRawFactory.unload(IBioEntity entity, java.io.Writer writer)`
`void` | `MapTabFactory.unload(IBioEntity obj, java.io.Writer writer)`
`void` | `OntologyTabFactory.unload(IBioEntity entity, java.io.Writer writer)`
`void` | `XmlBioEntityFactory.unload(IBioEntity obj, java.io.Writer writer)`

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