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## Uses of Class
org.metaqtl.MetaQtlAnalysis

Packages that use MetaQtlAnalysis
org.metaqtl.adapter |
org.metaqtl.algo |
org.metaqtl.factory |
org.metaqtl.main |

Uses of MetaQtlAnalysis in org.metaqtl.adapter

Methods in org.metaqtl.adapter that return MetaQtlAnalysis
`static MetaQtlAnalysis` | `MetaQtlAnalysisAdapter.adapt(Chromosome[] chromosomes)`

Methods in org.metaqtl.adapter with parameters of type MetaQtlAnalysis
`static QtlPartition` | `QtlPartitionAdapter.adapt(MetaQtlAnalysis analysis, java.lang.String chrom, java.lang.String trait, int k)` Adapt the `MetaQtlAnalysis` `analysis` for a given value of the number of clusters `k` and a given trait name `code`.

Uses of MetaQtlAnalysis in org.metaqtl.algo

Fields in org.metaqtl.algo declared as MetaQtlAnalysis
`protected MetaQtlAnalysis` | `ClustAlgorithm.result` The result of the clustering.

Methods in org.metaqtl.algo that return MetaQtlAnalysis
`MetaQtlAnalysis` | `ClustAlgorithm.getResult()` When the algorithm is finished use this method to get the result.

Uses of MetaQtlAnalysis in org.metaqtl.factory

Methods in org.metaqtl.factory that return MetaQtlAnalysis
`static MetaQtlAnalysis` | `MetaQtlAnalysisFactory.read(java.io.InputStream stream)`
`static MetaQtlAnalysis` | `MetaQtlAnalysisFactory.read(java.io.Reader reader)`

Methods in org.metaqtl.factory with parameters of type MetaQtlAnalysis
`static void` | `MetaQtlAnalysisFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream)` This methods writes out in the given `stream` the results of a QTL meta-analysis.
`static void` | `MetaQtlAnalysisModelFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream)`
`static void` | `MetaQtlAnalysisSummaryFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream)` This method writes out the summary for a givene QTL meta-analysis result `analysis` on the given output stream `stream`.
`static void` | `MetaQtlAnalysisModelFactory.write(MetaQtlAnalysis analysis, java.io.Writer writer)`

Uses of MetaQtlAnalysis in org.metaqtl.main

Methods in org.metaqtl.main that return MetaQtlAnalysis
`protected static MetaQtlAnalysis` | `MetaMain.getResult(java.lang.String resFile)`

Methods in org.metaqtl.main with parameters of type MetaQtlAnalysis
`static ChromGraph[]` | `MetaMain.getChromGraph(Chromosome[] chroms, boolean withQtl, int modeQtl, IBioOntology ontology, MetaQtlAnalysis treeAnalysis)`
`static QtlPartition` | `MetaMain.getQtlPartition(Chromosome chrom, MetaQtlAnalysis analysis, java.lang.String trait, int k, char tclust)`

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