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## B

BACKGROUND_COLOR - Static variable in class org.metaqtl.graph.MetaGraphPar
  The color of the backgroud.
base - Static variable in class org.metaqtl.graph.PaletteColor
BC - Static variable in interface org.thalia.bio.IBioCrossTypes
beta(double, double) - Static method in class org.metaqtl.numrec.NumericalUtilities
  Returns the beta function I(a,b)
betacf(double, double, double) - Static method in class org.metaqtl.numrec.NumericalUtilities
  Used by betai : Evaluates continued fraction for incomplete beta function by modified Lentz's method.
betai(double, double, double) - Static method in class org.metaqtl.numrec.NumericalUtilities
  Returns the incomplete beta function Ix(a,b)
BIC - Static variable in class org.metaqtl.EMCriteria
bic - Variable in class org.metaqtl.EMCriteria
BIC_NAME - Static variable in class org.metaqtl.EMCriteria
BioCrossTypes - Class in org.thalia.bio.util
BioCrossTypes() - Constructor for class org.thalia.bio.util.BioCrossTypes
BioEntity - Class in org.thalia.bio.entity
  Class Description Here
BioEntity() - Constructor for class org.thalia.bio.entity.BioEntity
BioEntity(String, IBioEntity) - Constructor for class org.thalia.bio.entity.BioEntity
BioEntityAdapter - Class in org.thalia.bio.entity.adapter
  Class Description Here
BioEntityAdapter() - Constructor for class org.thalia.bio.entity.adapter.BioEntityAdapter
BioEntityBean - Class in org.thalia.bio.entity.bean
  Class Description Here
BioEntityBean() - Constructor for class org.thalia.bio.entity.bean.BioEntityBean
BioEntityCollection - Class in org.thalia.bio.entity
  Class Description Here
BioEntityCollection() - Constructor for class org.thalia.bio.entity.BioEntityCollection
BioEntityCollection(int) - Constructor for class org.thalia.bio.entity.BioEntityCollection
BioEntityCollectionAdapter - Class in org.thalia.bio.entity.adapter
  Class Description Here
BioEntityCollectionAdapter() - Constructor for class org.thalia.bio.entity.adapter.BioEntityCollectionAdapter
BioEntityCollectionBean - Class in org.thalia.bio.entity.bean
  Class Description Here
BioEntityCollectionBean() - Constructor for class org.thalia.bio.entity.bean.BioEntityCollectionBean
BioEntityContainer - Class in org.thalia.bio.entity
  Class Description Here
BioEntityContainer() - Constructor for class org.thalia.bio.entity.BioEntityContainer
BioEntityContainer(String, IBioEntity) - Constructor for class org.thalia.bio.entity.BioEntityContainer
BioEntityFactory - Class in org.thalia.bio.entity.factory
  Class Description Here
BioEntityFactory() - Constructor for class org.thalia.bio.entity.factory.BioEntityFactory
BioEntityNameComparator - Class in org.thalia.bio.util
  Class Description Here
BioLocusTypes - Class in org.thalia.bio.util
BioLocusTypes() - Constructor for class org.thalia.bio.util.BioLocusTypes
BioUtilities - Class in org.thalia.bio.util
  General comments must be added here.
BioUtilities() - Constructor for class org.thalia.bio.util.BioUtilities
BOX_HEIGHT - Static variable in class org.metaqtl.graph.GraphFactory
BOX_WIDTH - Static variable in class org.metaqtl.graph.GraphFactory
build(Graphics2D) - Method in class org.metaqtl.graph.ChromLayer
build(Graphics2D) - Method in class org.metaqtl.graph.Layer
  Build the layer.
build(Graphics2D) - Method in class org.metaqtl.graph.QtlLayer
build(Graphics2D) - Method in class org.metaqtl.graph.QtlPartitionLayer
build(Graphics2D) - Method in class org.metaqtl.graph.QtlTreeLayer
buildQtlTree(MetaQtlData) - Method in class org.metaqtl.algo.QtlTreeAlgorithm
  For the given data points this method build the tree which represents the hierarchical clustering.
buildShape(Graphics2D, Object) - Method in class org.metaqtl.graph.ChromShape
buildShape(Graphics2D, Object) - Method in class org.metaqtl.graph.GraphShape
buildShape(Graphics2D, Object) - Method in class org.metaqtl.graph.QtlShape
  This methods create a new QtlShape from the given graphics context.

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