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# Constant Field Values

Contents

- org.metaqtl.*

org.metaqtl.*

org.metaqtl.EMCriteria
`public static final int` | `AIC` | `0`
`public static final java.lang.String` | `AIC_NAME` | `"AIC"`
`public static final int` | `AIC3` | `1`
`public static final java.lang.String` | `AIC3_NAME` | `"AIC3"`
`public static final int` | `AICc` | `5`
`public static final java.lang.String` | `AICc_NAME` | `"AICc"`
`public static final int` | `AWE` | `4`
`public static final java.lang.String` | `AWE_NAME` | `"AWE"`
`public static final int` | `BIC` | `3`
`public static final java.lang.String` | `BIC_NAME` | `"BIC"`
`public static final int` | `ICOMP` | `2`
`public static final java.lang.String` | `ICOMP_NAME` | `"ICOMP"`

org.metaqtl.IBioGenomeProperties
`public static final java.lang.String` | `CROSS_SIZE` | `"cross.size"`
`public static final java.lang.String` | `CROSS_TYPE` | `"cross.type"`
`public static final java.lang.String` | `MAPPING_CROSS` | `"mapping.cross"`
`public static final java.lang.String` | `MAPPING_EXPANSION` | `"mapping.expansion"`
`public static final java.lang.String` | `MAPPING_FUNCTION` | `"mapping.function"`
`public static final java.lang.String` | `MAPPING_FUNCTION_HALDANE` | `"haldane"`
`public static final java.lang.String` | `MAPPING_FUNCTION_KOSAMBI` | `"kosambi"`
`public static final java.lang.String` | `MAPPING_UNIT` | `"mapping.unit"`
`public static final java.lang.String` | `MAPPING_UNIT_CM` | `"cM"`
`public static final java.lang.String` | `MAPPING_UNIT_M` | `"M"`

org.metaqtl.IBioLGroupProperties
`public static final java.lang.String` | `CHISQUARE` | `"meta.chisquare"`
`public static final java.lang.String` | `DOF` | `"meta.dof"`
`public static final java.lang.String` | `PVALUE` | `"meta.pvalue"`

org.metaqtl.IBioLocusProperties
`public static final java.lang.String` | `DUBIOUS_ORDER` | `"dubious.order"`
`public static final java.lang.String` | `OCCURENCE` | `"meta.occurence"`
`public static final java.lang.String` | `QTL_CI_FROM` | `"qtl.ci.from"`
`public static final java.lang.String` | `QTL_CI_LOD_DECREASE` | `"qtl.ci.lod.decrease"`
`public static final java.lang.String` | `QTL_CI_TO` | `"qtl.ci.to"`
`public static final java.lang.String` | `QTL_CROSS_NAME` | `"qtl.cross.name"`
`public static final java.lang.String` | `QTL_CROSS_SIZE` | `"qtl.cross.size"`
`public static final java.lang.String` | `QTL_CROSS_TYPE` | `"qtl.cross.type"`
`public static final java.lang.String` | `QTL_PROJ_INTSCALE` | `"qtl.proj.intScale"`
`public static final java.lang.String` | `QTL_PROJ_MAPSCALE` | `"qtl.proj.mapScale"`
`public static final java.lang.String` | `QTL_PROJ_ORIGIN` | `"qtl.proj.mapOrigin"`
`public static final java.lang.String` | `QTL_PROJ_SHAREFLANKING` | `"qtl.proj.shareFlanking"`
`public static final java.lang.String` | `QTL_PROJ_SWAPFLANKING` | `"qtl.proj.swapFlanking"`
`public static final java.lang.String` | `QTL_STATS_ADDITIVE` | `"qtl.effect.additive"`
`public static final java.lang.String` | `QTL_STATS_DOMINANCE` | `"qtl.effect.dominance"`
`public static final java.lang.String` | `QTL_STATS_RSQUARE` | `"qtl.rsquare"`
`public static final java.lang.String` | `QTL_TRAIT_GROUP` | `"qtl.trait.group"`
`public static final java.lang.String` | `QTL_TRAIT_NAME` | `"qtl.trait.name"`
`public static final java.lang.String` | `QTL_TRAIT_UNIT` | `"qtl.trait.unit"`

org.metaqtl.IMetaQtlConstants
`public static final int` | `CI_MISS_IGNORE` | `2`
`public static final int` | `CI_MISS_IMPUTATION` | `1`
`public static final int` | `CI_MODE_AVAILABLE` | `1`
`public static final int` | `CI_MODE_LOD` | `2`
`public static final int` | `CI_MODE_MAXIMAL` | `4`
`public static final int` | `CI_MODE_RSQUARE` | `3`
`public static final int` | `MAPPING_FUNCTION_HALDANE` | `1`
`public static final int` | `MAPPING_FUNCTION_KOSAMBI` | `2`
`public static final int` | `MAPPING_FUNCTION_UNKNOWN` | `0`
`public static final int` | `MAPPING_UNIT_CM` | `2`
`public static final int` | `MAPPING_UNIT_M` | `1`
`public static final int` | `MAPPING_UNIT_UNKNOWN` | `0`
`public static final double` | `TINY_MAPPING_DISTANCE` | `1.0E-5`
`public static final double` | `TINY_MAPPING_VARIANCE` | `1.0E-32`
`public static final java.lang.String` | `VERSION` | `"1.0"`

org.metaqtl.QtlPartition
`public static final int` | `HORIZONTAL_MODE` | `0`
`public static final int` | `VERTICAL_MODE` | `1`

org.metaqtl.algo.EMAlgorithm
`public static final int` | `EM_CONTINUE` | `1`
`public static final int` | `EM_FAILURE` | `2`
`public static final int` | `EM_OK` | `0`
`public static final double` | `TINY_Z_PROBA` | `4.9E-324`

org.metaqtl.algo.HClustAlgorithm
`public static final int` | `CENTROID_METHOD` | `1`
`public static final int` | `WARD_METHOD` | `2`

org.metaqtl.bio.IBioCrossTypes
`public static final int` | `BC` | `1`
`public static final int` | `DH` | `6`
`public static final int` | `IRISe` | `7`
`public static final int` | `IRISi` | `8`
`public static final int` | `RF` | `5`
`public static final int` | `RILSe` | `2`
`public static final int` | `RILSi` | `3`
`public static final int` | `SF` | `4`
`public static final int` | `UNKNOWN` | `0`

org.metaqtl.bio.IBioEntityTypes
`public static final int` | `ALLELE` | `8`
`public static final int` | `COLLECTION` | `9`
`public static final int` | `GENOME` | `3`
`public static final int` | `INDIVIDUAL` | `1`
`public static final int` | `LGROUP` | `4`
`public static final int` | `LOCUS` | `5`
`public static final int` | `MARKERLOCUS` | `6`
`public static final int` | `ONTOLOGY` | `11`
`public static final int` | `ONTOLOGY_TERM` | `10`
`public static final int` | `POPULATION` | `2`
`public static final int` | `QTLLOCUS` | `7`

org.metaqtl.bio.IBioLocus
`public static final int` | `MARKER` | `0`
`public static final int` | `QTL` | `1`

org.metaqtl.bio.IOntologyTermProperties
`public static final java.lang.String` | `DEFINITION` | `"term.definition"`
`public static final java.lang.String` | `SYNONYMS` | `"term.synonyms"`

org.metaqtl.bio.entity.IGeneticMapProperties
`public static final java.lang.String` | `cartoFunctionHaldane` | `"haldane"`
`public static final java.lang.String` | `cartoFunctionKey` | `"carto.function"`
`public static final java.lang.String` | `cartoFunctionKosambi` | `"kosambi"`
`public static final java.lang.String` | `distanceUnitCM` | `"cM"`
`public static final java.lang.String` | `distanceUnitKey` | `"distance.unit"`

org.metaqtl.bio.util.ILGroupPosition
`public static final int` | `ESTIMATED` | `2`
`public static final int` | `STATIC` | `1`

org.metaqtl.factory.MetaQtlModelFactory
`public static final java.lang.String` | `SEPARATOR` | `"\t"`

org.metaqtl.graph.ChromLayer
`public static final int` | `ALIGN_FIRST_COMMON` | `0`
`public static final int` | `ALIGN_FIRST_MARKER` | `1`
`public static final int` | `LEFT_LABEL` | `1`
`public static final int` | `NEG_COMMON` | `1`
`public static final int` | `POS_COMMON` | `0`
`public static final int` | `RIGHT_LABEL` | `0`
`public static final int` | `SINGLE_COMMON` | `2`

org.metaqtl.graph.ChromShape
`public static final int` | `LEFT_LABEL` | `1`
`public static final int` | `RIGHT_LABEL` | `0`

org.metaqtl.util.OffspringManager.HaldaneWaddingtonProportion
`public static final double` | `C_coeff` | `1.0`
`public static final double` | `D_coeff` | `1.0`
`public static final double` | `E_coeff` | `2.0`
`public static final double` | `F_coeff` | `0.5`
`public static final double` | `G_coeff` | `0.5`

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