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## Uses of Class
org.metaqtl.Qtl

Packages that use Qtl
org.metaqtl |
org.metaqtl.adapter |

Uses of Qtl in org.metaqtl

Fields in org.metaqtl declared as Qtl
`Qtl[]` | `Chromosome.mqtls` The meta Qtls on this chromosome.
`Qtl[][]` | `MetaQtlAnalysis.qtlByChrom` The matrix of qtl by chromosome
`Qtl[]` | `Chromosome.qtls` The QTLs located on this chromosome.
`protected Qtl[]` | `MetaQtlData.qtls` The QTL.

Methods in org.metaqtl that return Qtl
`Qtl` | `Qtl.getCopy()` Returns a copy of the QTL.
`Qtl[]` | `MetaQtlResult.getMetaQtl(int k)`
`Qtl[]` | `MetaQtlAnalysis.getMetaQtl(java.lang.String chrom, java.lang.String trait, int k)` Returns the meta Qtl for the given chromosome indice `cidx`, the given trait name `trait` and the given number of clusters `k`.
`Qtl[]` | `Chromosome.getMetaQtls()`
`Qtl` | `MetaQtlData.getQtl(int i, int j)` Returns the j^th QTL in the i^th cluster.
`Qtl[]` | `Chromosome.getQtls()` This method returns a copy of the QTL located on thic chromosome.

Methods in org.metaqtl with parameters of type Qtl
`void` | `Chromosome.attachQtl(Qtl[] qtls)`
`double` | `Chromosome.getQTLInMrkIntProb(int mrkIdxL, int mrkIdxR, Qtl qtl)` This methods returns the probability that the QTL be inside the marker interval with the given right and left marker indices and the given QTL.
`void` | `Chromosome.setMetaQtls(Qtl[] metaQtl)`

Constructors in org.metaqtl with parameters of type Qtl
`MetaQtlData(Qtl[] qtls)` Create a new instance of `MetaQtlData` which will represent the given array of `Qtl`.

Uses of Qtl in org.metaqtl.adapter

Methods in org.metaqtl.adapter that return Qtl
`static Qtl[]` | `QtlAdapter.adapt(EMResult result)` From a result of a EM clustering returns the mixture components as an array of Qtl.
`static Qtl` | `QtlAdapter.toQTL(IBioLocus locus)` This method converts an object which class implements the `IBioLocus`interface into a `Qtl`.``

Methods in org.metaqtl.adapter with parameters of type Qtl
`static QtlPartition` | `QtlPartitionAdapter.adapt(MetaQtlResult result, Qtl[] qtls, int k)`
`static IBioLocus` | `QtlAdapter.fromQTL(Qtl qtl)` This method converts a `Qtl` into an object which class implements the `IBioLocus`interface.``

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