org.metaqtl
Class MetaChrom

java.lang.Object
  org.metaqtl.MetaChrom

public class MetaChrom
extends java.lang.Object

A MetaChrom is the result of the merge of the members of a ChromCluster.

Field Summary

double	chi2 The chi-square value of this chromosome.
double[]	d The absolute positions of markers in Morgan.
int	dof The number of degrees of freedom.
java.lang.String[]	mapNames The names of the genetic maps.
java.lang.String[]	mrkNames The ordered marker names.
int[]	mrkOc The number of occurence per marker oved chromosomes.
java.lang.String	name The name of the meta chrom.
int	nc The number of chromosomes implied.
int	ni The number of marker intervals implied in this consensus.
int	nm The number of markers.
int[]	nmc The number of marker per implied chromosome
double	pvalue The p-value of this chromosome.
double[]	rsd The standardized residual between original marker intervals and those of the meta chromosome.
double[]	sdd The standard deviation of the position in Morgan.

Constructor Summary

MetaChrom(MultiFitResult result, ChromCluster chromCluster)
Get a new instance of MetaChrom which is initialized by using the result of the merge of the members of a ChromCluster.

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nc

public int nc

The number of chromosomes implied.

nm

public int nm

The number of markers.

ni

public int ni

The number of marker intervals implied in this consensus.

dof

public int dof

The number of degrees of freedom.

nmc

public int[] nmc

The number of marker per implied chromosome

mrkOc

public int[] mrkOc

The number of occurence per marker oved chromosomes.

chi2

public double chi2

The chi-square value of this chromosome.

pvalue

public double pvalue

The p-value of this chromosome.

rsd

public double[] rsd

The standardized residual between original marker intervals and those of the meta chromosome.

d

public double[] d

The absolute positions of markers in Morgan.

sdd

public double[] sdd

The standard deviation of the position in Morgan.

name

public java.lang.String name

The name of the meta chrom.

mapNames

public java.lang.String[] mapNames

The names of the genetic maps.

mrkNames

public java.lang.String[] mrkNames

The ordered marker names.

Constructor Detail

MetaChrom

public MetaChrom(MultiFitResult result,
                 ChromCluster chromCluster)

Get a new instance of MetaChrom which is initialized by using the result of the merge of the members of a ChromCluster.

Parameters:

result - the result of the merge of the members of the cluster.

cluster - the chromosome cluster.