Uses of Class
org.metaqtl.MetaQtlAnalysis

Packages that use MetaQtlAnalysis

org.metaqtl.adapter
org.metaqtl.algo
org.metaqtl.factory
org.metaqtl.main

Uses of MetaQtlAnalysis in org.metaqtl.adapter

Methods in org.metaqtl.adapter that return MetaQtlAnalysis

static MetaQtlAnalysis

MetaQtlAnalysisAdapter.adapt(Chromosome[] chromosomes)

Methods in org.metaqtl.adapter with parameters of type MetaQtlAnalysis

static QtlPartition

QtlPartitionAdapter.adapt(MetaQtlAnalysis analysis, java.lang.String chrom, java.lang.String trait, int k) Adapt the MetaQtlAnalysis analysis for a given value of the number of clusters k and a given trait name code.

Uses of MetaQtlAnalysis in org.metaqtl.algo

Fields in org.metaqtl.algo declared as MetaQtlAnalysis

protected MetaQtlAnalysis

ClustAlgorithm.result The result of the clustering.

Methods in org.metaqtl.algo that return MetaQtlAnalysis

MetaQtlAnalysis

ClustAlgorithm.getResult() When the algorithm is finished use this method to get the result.

Uses of MetaQtlAnalysis in org.metaqtl.factory

Methods in org.metaqtl.factory that return MetaQtlAnalysis

static MetaQtlAnalysis	MetaQtlAnalysisFactory.read(java.io.InputStream stream)
static MetaQtlAnalysis	MetaQtlAnalysisFactory.read(java.io.Reader reader)

Methods in org.metaqtl.factory with parameters of type MetaQtlAnalysis

static void	MetaQtlAnalysisFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream) This methods writes out in the given stream the results of a QTL meta-analysis.
static void	MetaQtlAnalysisModelFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream)
static void	MetaQtlAnalysisSummaryFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream) This method writes out the summary for a givene QTL meta-analysis result analysis on the given output stream stream.
static void	MetaQtlAnalysisModelFactory.write(MetaQtlAnalysis analysis, java.io.Writer writer)

Uses of MetaQtlAnalysis in org.metaqtl.main

Methods in org.metaqtl.main that return MetaQtlAnalysis

protected static MetaQtlAnalysis

MetaMain.getResult(java.lang.String resFile)

Methods in org.metaqtl.main with parameters of type MetaQtlAnalysis

static ChromGraph[]	MetaMain.getChromGraph(Chromosome[] chroms, boolean withQtl, int modeQtl, IBioOntology ontology, MetaQtlAnalysis treeAnalysis)
static QtlPartition	MetaMain.getQtlPartition(Chromosome chrom, MetaQtlAnalysis analysis, java.lang.String trait, int k, char tclust)