Uses of Class
org.metaqtl.Tree

Packages that use Tree

org.metaqtl
org.metaqtl.algo
org.metaqtl.factory

Uses of Tree in org.metaqtl

Fields in org.metaqtl declared as Tree

Tree	MetaQtlResult.tree The qtl tree
Tree	QtlPartition.tree The Qtl tree.

Methods in org.metaqtl that return Tree

Tree	MetaQtlResult.getQtlTree()

Methods in org.metaqtl with parameters of type Tree

void	MetaQtlResult.setTree(Tree tree)
void	QtlPartition.setTree(Tree tree)

Uses of Tree in org.metaqtl.algo

Methods in org.metaqtl.algo that return Tree

static Tree	HClustAlgorithm.CentroidMethod(double[] x, double[] sd) This method performs a hierarchical clustering of the given data points using a centroid method based on the mahalanobis distance.
static Tree	HClustAlgorithm.run(double[] x, double[] sd) This method performs a agglomerative clustering of the given data points where x is the vector of observed values and sd the vector of their standard deviations.
static Tree	HClustAlgorithm.WardMethod(double[] x, double[] sd) This method performs a hierarchical clustering of the given data points using the Ward's method.

Uses of Tree in org.metaqtl.factory

Methods in org.metaqtl.factory that return Tree

static Tree	TreeFactory.read_newick(java.io.Reader reader)
static Tree	TreeFactory.read_newick(java.lang.String treeStr)
static Tree	TreeFactory.read(java.io.Reader reader)
static Tree	TreeFactory.read(java.lang.String str)

Methods in org.metaqtl.factory with parameters of type Tree

static void	TreeFactory.write(Tree tree, java.io.OutputStream stream) This method writes out the given tree nodes as an array of TreeNode on the given output stream stream.
static void	TreeFactory.write(Tree tree, java.io.PrintWriter writer) This method writes out the given tree nodes as an array of TreeNode using the given writer writer.