|
Class Summary |
| ChromCluster |
A cluster of chromosomes which share the same name inside a
MapCluster framwork. |
| Chromosome |
On a Chromosome there are two types of locus :
Marker
QTL (Quantitative Trait Loci)
inside a mapping context which is defined by both the mapping framework
(function and unit) and the population cross design used to build this
chromosome. |
| CMarkerSequence |
A Common marker sequence between two ordered set of markers
is a sub-set of at least two markers which order is the same between
the two sets (may be reverse). |
| EMCriteria |
|
| EMResult |
|
| MapCluster |
|
| MetaChrom |
A MetaChrom is the result of the merge of the members of a
ChromCluster. |
| MetaDico |
This class represents a dictionnary of synonyms. |
| MetaMap |
A MetaMap is a bundle of MetaChrom objects. |
| MetaQtlAnalysis |
A QTL meta analysis consists in a clustering of QTL positions over
chromosomes for different group of traits. |
| MetaQtlData |
QTL meta analysis first requires to gather the QTL according
to the group trait they belong and then to format the QTL data
into data points to perfom clustering. |
| MetaQtlModel |
|
| MetaQtlResult |
A MetaQtlResult is used to store the
results of a QTL meta analysis which has been performed
for a given trait group on a given chromosome. |
| MultiFitResult |
This class represents a result of a multilinear regression
analysis. |
| Qtl |
A QTL (Quantitative Trait Loci) |
| QtlPartition |
|
| Tree |
This class defines a tree. |
| TreeNode |
This class represents a node in a binary Tree obtained
when applying usual hirarchical clustering methods. |