org.thalia.bio.entity
Class GeneticMap

java.lang.Object
  org.thalia.bio.entity.BioEntity
      org.thalia.bio.entity.BioEntityContainer
          org.thalia.bio.entity.GroupContainer
              org.thalia.bio.entity.GeneticMap

All Implemented Interfaces:

IBioAdaptable, IBioEntity, IBioGenome

public class GeneticMap
extends GroupContainer

Class Description Here

Author:

Jean-Baptiste Veyrieras

Field Summary

Fields inherited from class org.thalia.bio.entity.BioEntityContainer

entities

Fields inherited from class org.thalia.bio.entity.BioEntity

name, parent, properties

Constructor Summary

GeneticMap()

GeneticMap(java.lang.String name)

GeneticMap(java.lang.String name, IBioEntity parent)

Method Summary

IBioAdapter	getBioAdapter()
int	getType() There are 2 main class of entities.
GeneticMap	merge(GeneticMap map) Deprecated.

Methods inherited from class org.thalia.bio.entity.GroupContainer

addGroup, getGroup, groupNumber, groups, removeGroup

Methods inherited from class org.thalia.bio.entity.BioEntityContainer

addEntity, entities, entityNumber, getEntity, removeEntity

Methods inherited from class org.thalia.bio.entity.BioEntity

getName, getParent, getProperties, newBioEntity, setName, setProperties

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.thalia.bio.IBioEntity

getName, getParent, getProperties, setName, setProperties

Constructor Detail

GeneticMap

public GeneticMap()

GeneticMap

public GeneticMap(java.lang.String name,
                  IBioEntity parent)

Parameters:

name -

parent -

GeneticMap

public GeneticMap(java.lang.String name)

Parameters:

name -

Method Detail

merge

public GeneticMap merge(GeneticMap map)

Deprecated.

Parameters:

map -

Returns:

getType

public int getType()

Description copied from interface: IBioEntity

There are 2 main class of entities. The first one deals with population biological entity, i.e population itself and individuals. The second class is a representation of microscopic biological entity from genome container to alleles.

Specified by:

getType in interface IBioEntity

Specified by:

getType in class GroupContainer

getBioAdapter

public IBioAdapter getBioAdapter()