org.thalia.bio.entity
Class GroupContainer

java.lang.Object
  org.thalia.bio.entity.BioEntity
      org.thalia.bio.entity.BioEntityContainer
          org.thalia.bio.entity.GroupContainer

All Implemented Interfaces:

IBioAdaptable, IBioEntity, IBioGenome

Direct Known Subclasses:

GeneticMap

public abstract class GroupContainer
extends BioEntityContainer
implements IBioGenome

Class Description Here

Author:

Jean-Baptiste Veyrieras

Field Summary

Fields inherited from class org.thalia.bio.entity.BioEntityContainer

entities

Fields inherited from class org.thalia.bio.entity.BioEntity

name, parent, properties

Constructor Summary

GroupContainer()

GroupContainer(java.lang.String name, IBioEntity parent)

Method Summary

void	addGroup(IBioLGroup group)
IBioLGroup	getGroup(java.lang.String name)
abstract int	getType() There are 2 main class of entities.
int	groupNumber()
IBioLGroup[]	groups()
void	removeGroup(java.lang.String name)

Methods inherited from class org.thalia.bio.entity.BioEntityContainer

addEntity, entities, entityNumber, getEntity, removeEntity

Methods inherited from class org.thalia.bio.entity.BioEntity

getName, getParent, getProperties, newBioEntity, setName, setProperties

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.thalia.bio.IBioEntity

getName, getParent, getProperties, setName, setProperties

Methods inherited from interface org.thalia.bio.IBioAdaptable

getBioAdapter

Constructor Detail

GroupContainer

public GroupContainer()

GroupContainer

public GroupContainer(java.lang.String name,
                      IBioEntity parent)

Parameters:

name -

parent -

Method Detail

groups

public IBioLGroup[] groups()

Specified by:

groups in interface IBioGenome

getGroup

public IBioLGroup getGroup(java.lang.String name)

Specified by:

getGroup in interface IBioGenome

addGroup

public void addGroup(IBioLGroup group)

Specified by:

addGroup in interface IBioGenome

removeGroup

public void removeGroup(java.lang.String name)

Specified by:

removeGroup in interface IBioGenome

groupNumber

public int groupNumber()

Specified by:

groupNumber in interface IBioGenome

getType

public abstract int getType()

Description copied from interface: IBioEntity

There are 2 main class of entities. The first one deals with population biological entity, i.e population itself and individuals. The second class is a representation of microscopic biological entity from genome container to alleles.

Specified by:

getType in interface IBioEntity

Specified by:

getType in class BioEntity