This directory contains the installable MathLink module pairelvsIF
(called via pairelvsIFsh since we need to set a path), the additional
binaries used by it, as well as the source files from which everything is 
built. 

Also included is the shell script buildpairelvsIF which makes all the
binaries. Before running buildpairelvsIF it is a good idea to make sure
that:

- the command matlab invokes Matlab 6.5;
- mex and mcc actually work when invoked from the Matlab prompt
  and, preferably, compile using gcc.
- the command mprep invokes the corresponding utility shipped with Mathematica.


If you actually modify the source files, it is much easier to debug from 
within Matlab before integrating into Mathematica. To this end the 
subdirectory "test" contains the Matlab function coverN.m which calculates 
elementary fluxes using pairelvs. Be warned however that the stuff in "test"
is junk code which I just use for debugging.
