Arabidopsis thaliana
REGULATORY
ELEMENT ANALYZER |
AtREA
CRE distribution
analysis tool
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CRE
Inputs
Help
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Avaliable
Input
Formats for
CRE distribution
analysis tool
Single
CRE in consensus format
Single
CRE matrix
CRE
consensus Pairs
Multiple
Consensus Seuqences
List of known CREs
PLACE database
ATCISDB database (Please note signs such as "(" or "/" are not allowed in AtREA,convert AtCISDB motifs which possess this sign to IUPAC)
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CRE format :
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If
the choosen format
is consensus
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Enter
CRE consensus
sequence :
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OR
if the choosen
format is matrix
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Enter CRE
matrix:
Matrix
score cutoff:
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OR if the choosen
format is CRE Consensus pair
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Enter the first CRE
consensus
sequence :
Enter the second CRE
consensus
sequence :
Minimum allowed
distance between the CREs :
Maximum allowed
distance
between the CREs:
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OR if the choosen
format is multiple CRE consensus sequences
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Enter up to 4 CRE
consensus
sequences separated by hashes(#) :
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Select
Class Help
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Select
class category :
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Fold Cutoff (only for
expression classes) :
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Select
Features Help
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Select
strand :
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Select
Position Window :
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Select
minimum frequency :
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Select
a P-value cutoff Help
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P-value cutoff
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ananyo.c@gmail.com
Department of
Biophysics, Molecular Biology and Genetics, University
of Calcutta, India
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