User friendly PDB (Protein Data Bank) file editor with graphic user interface

To Download : http://bioinformatics.org/pdbeditor/PDBEditor.jar

Run by : java -jar PDBEditor.jar

Tool for protein crystallographers to expedite selective edit / data extraction / analysis of their PDB files

Runs on any operating system supported by Java 6 (Windows, MacOS, Linux)
< Java 6 is required - download FREE from http://www.java.com >

'''General Features'''

* Search and edit (in parallel) coordinates based on conditions user specifies

* Quickly extract and write selected data in tab delimited format to analyze in spreadsheet or other statistical programs using clipboard action (cut + copy + paste)

* Quickly amend atoms and spacegroup by clipboard action

* Manipulate atoms in fractional coordinates


* Edit spacegroup and calculate SCALE matrix


* Arrange / sort / correct atom orderings



'''Extended Features'''

* Selectively generate symmetry mates in user defined condition to analyze packing of atoms in protein crystal to help aid choosing molecular replacement solutions

* Selectively analyze atom distances to expedite calculation of interaction distances

* Selectively rotate / translate atoms

* Selectively analyze stats (average, standard deviation, maximum, minimum) of atom's coordinates, B-factor, occupancy, etc.

* Extract sequence from atoms in FASTA format