Home > pgetoolbox > nucdiv.m

nucdiv

PURPOSE ^

NUCDIV - Nucleotide diversity in a population

SYNOPSIS ^

function [d] = nucdiv(aln,jcflag)

DESCRIPTION ^

NUCDIV - Nucleotide diversity in a population
DNAsp : * Nucleotide diversity, Pi (p), the average number of nucleotide differences per site 
 between two sequences (Nei 1987, equations 10.5 or 10.6), and its sampling variance (Nei 1987, equation 10.7).
 * Nucleotide diversity, Pi (p), the average number of nucleotide differences per site between 
 two sequences (Nei 1987, equations 10.5 or 10.6; see also Nei and Miller 1990), and its
 sampling variance (Nei 1987, equation 10.7). The standard deviation (or standard error) is the square root of the variance.

CROSS-REFERENCE INFORMATION ^

This function calls: This function is called by:
Generated on Tue 08-May-2007 11:34:27 by m2html © 2003