[BiO BB] BLC2004: Biological Language Conference
Madhavi Ganapathiraju
madhavi+blc at cs.cmu.edu
Thu Jan 22 18:04:37 EST 2004
BLC2004: 2nd Biological Language Conference,
Carnegie Mellon University, Pittsburgh, USA
http://flan.blm.cs.cmu.edu/blc2004/
Scope:
Integration of language technologies in bioinformatics/computational
biology research
Protein sequences from different organisms may be viewed as texts written
in different languages. The mapping of protein sequence to their structure,
dynamics and function then becomes analogous to the mapping of words to
meaning in natural languages. This analogy can be exploited by application
of statistical language modeling and text classification techniques to
biological sequences, thereby generating testable hypotheses regarding the
fundamental building blocks of "protein sequence language". The
biology-language analogy enables novel applications of language
technologies to the biology domain, but is to a great extent overlapping
with existing other computational biology/bioinformatics applications. The
purpose of the Biological Language Conference is to facilitate scientific
exchange between researchers using the language analogy approach directly
and researchers using other approaches.
We invite papers in the following areas of interest
secondary structure prediction
tertiary structure prediction
repetitive fold/supersecondary structure prediction
membrane protein-specific prediction challenges
protein folding/misfolding
protein dynamics and conformational changes
protein-protein interactions
protein/gene networks and pathways
microarray analysis
protein function prediction
DNA sequence analysis
efficient sequence processing
genome evolution/comparison
sequence alignment
protein family classification
immune system
database/toolkit development
mass spectrometry data analysis
Key Dates
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June 1st, 2004 Deadline for electronic paper submission
August 1st, 2004 Notification of acceptance
August 15th, 2004 Final camera-ready manuscript due
October 15th, 2004 Registration deadline
November 18-19, 2004 Conference
Conference is organized by the NSF funded Centre for Biological Language
Modeling (http://www.cs.cmu.edu/~blmt)
Contact:
Judith Klein-Seetharaman
judithks at cs.cmu.edu
BLC2003: http://flan.blm.cs.cmu.edu/meeting2003/
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