[BiO BB] New tools for transcriptome and array CGH experiments
Philippe Hupé
Philippe.Hupe at curie.fr
Wed Apr 13 11:56:15 EDT 2005
Dear colleague,
The Bioinformatics Unit of Institut Curie (Paris, France) is involved
in the development of algorithms for microarray data analysis, including
transcriptome, CGH and chromatine immunopricipitation microarrays.
For example, we have developed the following softwares:
- GLAD for breakpoints detection in array CGH experiments
- MAIA for automatic microarray image analysis
- MANOR for normalisation of microarray data
- VAMP, a java graphical interface for visualisation and analysis
of CGH array, transcriptome and other molecular profiles.
A demo version of VAMP can be run on our Web server for several public
CGH and transcriptome array data sets:
Douglas <http://cancerres.aacrjournals.org/cgi/content/full/64/14/4817>
et al. (2004),
Veltman <http://cancerres.aacrjournals.org/cgi/content/full/63/11/2872>
et al. (2003),
Pollack
<http://www.nature.com/cgi-taf/DynaPage.taf?file=/ng/journal/v23/n1/abs/ng0999_41.html&dynoptions=doi1112286216>
et al. (CGH and transcriptome array data, 2002),
Snijders
<http://www.nature.com/cgi-taf/DynaPage.taf?file=/ng/journal/v29/n3/abs/ng754.html&dynoptions=doi1112286347>
et al. (2001),
Nakao <http://carcin.oupjournals.org/cgi/content/full/25/8/1345> et al.
(2004) and
de Leeuw <http://hmg.oupjournals.org/cgi/content/full/13/17/1827> et al.
(2004).
VAMP can be requested at vamp at curie.fr, GLAD at glad at curie.fr and MANOR
at manor at curie.fr
Best regards
The Bioinformatics Unit of Institut Curie
PS:
The VAMP demo is available at http://bioinfo.curie.fr/vamp (Then click
on "Launch Vamp" and File->Import)
Two movies give you an overview of VAMP software capabilities.
- http://bioinfo-out.curie.fr/tutorial/vamp/vamp-demo1.html
- http://bioinfo-out.curie.fr/tutorial/vamp/vamp-demo2.html
We are developing a Web site and have several publications in
preparation in the field, and if you are interested we will let you know
when they will be available.
You can visit our Web site at http://bioinfo.curie.fr
--
Philippe Hupé
UMR 144 - Service Bioinformatique
Institut Curie
Laboratoire de Transfert (4ème étage)
26 rue d'Ulm
75005 Paris - France
Email : vamp at curie.fr
Tél : +33 (0)1 44 32 42 75
Fax : +33 (0)1 42 34 65 28
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